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SOG_test.yaml
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# SOG command processor batch description example for SOG model
# Parent directory name for batch results
batch_name: climate_sensitivity
# Machine
machine: Salish
# Set to 8 or 16 for Salish
max_concurrent_jobs: 8
# Output daily depth results in addition to timeseries
hoffmueller_results: False
paths:
# Absolute paths required, you can use ~ or $HOME if you wish.
SOG_code: /ocean/bmoorema/research/SOG/SOG-code-ocean/
initial: /ocean/bmoorema/research/SOG/SOG-initial
runs_directory: /ocean/bmoorema/research/SOG/Results
initialization:
ctd_directory: ctd
nutrients_directory: stratogem_nuts
# Provide an inline list, e.g. [datetime_start, datetime_end]
# For batch processing, provide a vertical list, e.g.
# - [datetime_start1, datetime_end1]
# - [datetime_start2, datetime_end2]
# - etc.
datetimes:
- ['2000-08-31 19:57:32', '2001-12-31 23:59:00']
- ['2001-09-19 19:49:25', '2002-12-31 23:59:00']
- ['2002-10-08 11:18:00', '2003-12-31 23:59:00']
- ['2003-10-09 11:47:00', '2004-12-31 23:59:00']
- ['2004-10-19 12:22:00', '2005-12-31 23:59:00']
- ['2005-09-15 01:24:21', '2006-12-31 23:59:00']
- ['2006-09-14 04:05:36', '2007-12-31 23:59:00']
- ['2007-10-04 00:34:02', '2008-12-31 23:59:00']
- ['2008-09-11 06:56:51', '2009-12-31 23:59:00']
- ['2009-09-18 19:09:16', '2010-12-31 23:59:00']
- ['2010-10-01 21:18:21', '2011-12-31 23:59:00']
- ['2011-09-12 00:12:20', '2012-12-31 23:59:00']
# Provide an inline list, e.g. [ctd_file, nuts_file]
# For batch processing, provide a vertical list, e.g.
# - [ctd_file1, nuts_file1]
# - [ctd_file2, nuts_file2]
# - etc.
files:
- [SG-39-2000-08-30.sog, Nuts-39-2000-08-30.sog]
- [SG-39-2001-09-19.sog, Nuts-39-2001-09-19.sog]
- [SG-S3-2002-10-08.sog, Nuts-S3-2002-10-08.sog]
- [SG-S3-2003-10-09.sog, Nuts-S3-2003-10-09.sog]
- [SG-S3-2004-10-19.sog, Nuts-S3-2004-10-19.sog]
- [SG-39-2005-09-15.sog, Nuts-39-2005-09-15.sog]
- [SG-39-2006-09-14.sog, Nuts-39-2006-09-14.sog]
- [SG-39-2007-10-04.sog, Nuts-39-2007-10-04.sog]
- [SG-39-2008-09-11.sog, Nuts-39-2008-09-11.sog]
- [SG-39-2009-09-18.sog, Nuts-39-2009-09-18.sog]
- [SG-39-2010-10-01.sog, Nuts-39-2010-10-01.sog]
- [SG-39-2011-09-12.sog, Nuts-39-2011-09-12.sog]
freshwater_chemistry:
river_TA:
- [True, 750]
- [False, 500]
- [False, 750]
- [False, 1000]
river_pH:
- 7.4
- 7.7
- 8.0
forcing:
# Provide an inline list, e.g.
# | ---------- Wind ----------- | ---------- Fresh ---------- | ------------ CF ----------- |
# On Fix Val Frac Add Year Shft On Fix Val Frac Add Year Shft On Fix Val Frac Add Year Shft
# [1, 0, 0, 1, 0, 2001, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
# For batch processing, provide a vertical list, e.g.
# - [1, 0, 0, 1, 0, 2001, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
# - [1, 0, 0, 1, 0, 2002, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
# - etc.
vary:
- [1, 0, 0, 1, 0, 2001, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] # --- 1.
- [1, 0, 0, 1, 0, 2002, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] # --- 2.
- [1, 0, 0, 1, 0, 2003, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] # --- 3.
- [1, 0, 0, 1, 0, 2004, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] # --- 4.
- [1, 0, 0, 1, 0, 2005, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] # --- 5.
- [1, 0, 0, 1, 0, 2006, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] # --- 6.
- [1, 0, 0, 1, 0, 2007, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] # --- 7.
- [1, 0, 0, 1, 0, 2008, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] # --- 8.
- [1, 0, 0, 1, 0, 2009, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] # --- 9.
- [1, 0, 0, 1, 0, 2010, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] # -- 10.
- [1, 0, 0, 1, 0, 2011, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] # -- 11.
- [1, 0, 0, 1, 0, 2012, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] # -- 12.
- [0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2001, 0, 0, 0, 0, 0, 0, 0, 0] # -- 13.
- [0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2002, 0, 0, 0, 0, 0, 0, 0, 0] # -- 14.
- [0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2003, 0, 0, 0, 0, 0, 0, 0, 0] # -- 15.
- [0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2004, 0, 0, 0, 0, 0, 0, 0, 0] # -- 16.
- [0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2005, 0, 0, 0, 0, 0, 0, 0, 0] # -- 17.
- [0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2006, 0, 0, 0, 0, 0, 0, 0, 0] # -- 18.
- [0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2007, 0, 0, 0, 0, 0, 0, 0, 0] # -- 19.
- [0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2008, 0, 0, 0, 0, 0, 0, 0, 0] # -- 20.
- [0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2009, 0, 0, 0, 0, 0, 0, 0, 0] # -- 21.
- [0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2010, 0, 0, 0, 0, 0, 0, 0, 0] # -- 22.
- [0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2011, 0, 0, 0, 0, 0, 0, 0, 0] # -- 23.
- [0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2012, 0, 0, 0, 0, 0, 0, 0, 0] # -- 24.
- [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2001, 0] # -- 25.
- [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2002, 0] # -- 26.
- [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2003, 0] # -- 27.
- [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2004, 0] # -- 28.
- [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2005, 0] # -- 29.
- [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2006, 0] # -- 30.
- [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2007, 0] # -- 31.
- [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2008, 0] # -- 32.
- [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2009, 0] # -- 33.
- [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2010, 0] # -- 34.
- [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2011, 0] # -- 35.
- [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2012, 0] # -- 36.