Replace NEWS with NEWS.md

Author: RonaldVisser

NEWS

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+# dendroNetwork: news {#dendroNetwork}
+
+## dendroNetwork 0.5.2 (development)
+
+### New features
+
+### Minor improvements
+
+-   added a CONTRIBUTING.md file for contribution guidelines
+
+### Bug Fixes
+
+-   corrected bug in cyto_clean_styles()
+-   corrected error in wuchwerte(). It is not using the anos1 dataset from dplR anymore
+-   corrected error in cyto_create_gn_style and cyto_create_cpm_style
+
+### Deprecated and defunct
+
+-   dev-folder removed, since this was not needed (created by biocthis)
+
+### Documentation fixes
+
+-   update acknowledgements in readme and paper
+-   corrected text of documentation in cor_mat_overlap()
+-   added pkgdown site: <https://ronaldvisser.github.io/dendroNetwork/>
+-   moved some images to man/figures
+-   added Vignette on Cytoscape use
+-   moved information for using big datasett to seperate vignette
+-   updated README: added more installion instructions
+-   corrected examples in cyto_create_gn_style and cyto_create_cpm_style
+
+### Continous integration
+
+# dendroNetwork 0.5.1 (2024-02-10)
+
+### New features
+
+### Minor improvements
+
+-   replaced igraph::graph.data.frame() with igraph::graph_from_data_frame(), since the former is deprecated in igraph 2.0.0
+-   replaced igraph::is.simple with igraph::is_simple
+-   replaced igraph::decompose.graph with igraph::decompose
+-   correction to calls to functions grDevices::colorRampPalette and stats::pnorm
+
+### Bug Fixes
+
+### Deprecated and defunct
+
+### Documentation fixes
+
+-   minor corrections to README
+-   added codemeta.json using codemetar::write_codemeta()
+-   added .github/CONTRIBUTING.md using usethis::use_tidy_contributing()
+-   DESCRIPTION: added URL and BugReports to DESCRIPTION + package checks
+-   correction in clique_community_names(\_par) functions, due to [k] seen as link
+-   added \dontrun{} to cytoscape functions
+
+### Continous integration
+
+-   added GitHub Action for BiocMananager (<https://lcolladotor.github.io/biocthis/index.html>)
+-   added more tests
+-   excluded Cytoscape-functions from testing
+
+# dendroNetwork 0.5.0 (2024-02-08)
+
+### New features
+
+-   First public release \### Minor improvements \### Bug Fixes \### Deprecated and defunct \### Documentation fixes \### Continous integration