@@ -10,112 +10,78 @@ name: GitHub Actions CI
1010
1111# # change if caches needs to be refreshed
1212env :
13- cache-version : v1
13+ cache-version : v3
1414
1515jobs :
1616 R-CMD-check :
1717 runs-on : ${{ matrix.config.os }}
18+
1819 name : ${{ matrix.config.os }} (${{ matrix.config.r }})
20+
1921 strategy :
2022 fail-fast : false
2123 matrix :
2224 config :
23- - {os: windows-latest, r: 'release', not_cran: 'true', rspm: "https://packagemanager.rstudio.com/all/latest"}
24- - {os: macos-11, r: 'release', not_cran: 'true', rspm: "https://packagemanager.rstudio.com/all/latest"}
25- - {os: macos-10.15, r: 'oldrel', not_cran: 'true', rspm: "https://packagemanager.rstudio.com/all/latest"}
26- - {os: ubuntu-20.04, r: 'devel', not_cran: 'true', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
27- - {os: ubuntu-20.04, r: 'release', not_cran: 'true', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
28- - {os: ubuntu-20.04, r: 'oldrel', not_cran: 'true', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
25+ - {os: windows-latest, r: 'oldrel', not_cran: 'true'}
26+ - {os: windows-latest, r: 'release', not_cran: 'true'}
27+ - {os: windows-latest, r: 'devel', not_cran: 'true'}
28+ # - {os: windows-2019, r: 'oldrel', not_cran: 'true'}
29+ - {os: macos-12, r: 'release', not_cran: 'true'}
30+ # - {os: macos-11, r: 'oldrel', not_cran: 'true'}
31+ - {os: ubuntu-latest, r: 'devel', not_cran: 'true'}
32+ - {os: ubuntu-latest, r: 'release', not_cran: 'true'} # OK
33+ - {os: ubuntu-latest, r: 'oldrel', not_cran: 'true'}
2934 env :
30- R_REMOTES_NO_ERRORS_FROM_WARNINGS : false
31- RSPM : ${{ matrix.config.rspm }}
3235 _R_CHECK_FORCE_SUGGESTS_ : true
3336 GITHUB_PAT : ${{ secrets.GITHUB_TOKEN }}
3437
3538 steps :
36- - uses : actions/checkout@v2
37-
38- - uses : r-lib/actions/setup-r@v1
39- with :
40- r-version : ${{ matrix.config.r }}
41- http-user-agent : ${{ matrix.config.http-user-agent }}
42-
43- - uses : r-lib/actions/setup-pandoc@v1
39+ - if : runner.os == 'macOS'
40+ run : brew install jags curl
4441
45- - name : Install remotes
42+ - name : Install JAGS on Windows (R release)
43+ if : (runner.os == 'windows') && (matrix.config.r != 'oldrel')
4644 run : |
47- install.packages('remotes')
48- saveRDS(remotes::dev_package_deps(dependencies = TRUE), "depends.Rds", version = 2)
49- shell : Rscript {0}
45+ curl --progress-bar -s -o 'C:\JAGS-4.3.1.exe' -L 'https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe'
46+ C:\JAGS-4.3.1.exe /S
5047
51- - name : Cache R packages
52- if : runner.os != 'Windows'
53- uses : actions/cache@v1
54- with :
55- path : ${{ env.R_LIBS_USER }}
56- key : ${{ env.cache-version }}-${{ runner.os }}-r-${{ matrix.config.r }}-${{ hashFiles('depends.Rds') }}
57- restore-keys : ${{ env.cache-version }}-${{ runner.os }}-r-${{ matrix.config.r }}-
58-
59- - name : Install system dependencies
60- if : runner.os == 'Linux'
48+ name : Install JAGS on Windows (R oldrel)
49+ if : (runner.os == 'windows') && (matrix.config.r == 'oldrel')
6150 run : |
62- while read -r cmd
63- do
64- eval sudo $cmd
65- done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
51+ curl --progress-bar -s -o 'C:\JAGS-4.3.0.exe' -L 'https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.0.exe'
52+ C:\JAGS-4.3.0.exe /S
6653
67- name : Install ghostscript (Linux)
68- if : runner.os == 'Linux'
69- run : |
70- sudo apt-get install -y ghostscript
71- sudo apt-get install -y curl
54+ uses : actions/checkout@v2
7255
73- name : Install jags (macOS)
74- if : runner.os == 'macOS'
75- run : brew install jags curl
56+ - uses : r-lib/actions/setup-pandoc@v2
7657
77- - name : Install jags (Windows)
78- if : runner.os == 'windows'
79- run : |
80- curl --progress-bar -s -o 'C:\JAGS-4.3.1.exe' -L 'https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe'
81- C:\JAGS-4.3.1.exe /S
58+ - uses : r-lib/actions/setup-r@v2
59+ with :
60+ r-version : ${{ matrix.config.r }}
61+ http-user-agent : ${{ matrix.config.http-user-agent }}
62+ use-public-rspm : true
8263
83- name : Install dependencies
84- run : |
85- remotes::install_deps(dependencies = TRUE)
86- remotes::install_cran("rcmdcheck")
87- remotes::install_cran("covr")
88- shell : Rscript {0}
64+ - uses : r-lib/actions/setup-r-dependencies@v2
65+ with :
66+ extra-packages : |
67+ any::rcmdcheck
68+ any::XML
69+ any::covr
70+ needs : check
8971
90- - name : Show session info
72+ - name : Show session info before test
9173 run : |
92- options(width = 100)
93- pkgs <- installed.packages()[, "Package"]
94- sessioninfo::session_info(pkgs, include_base = TRUE)
74+ print(utils::sessionInfo())
9575shell : Rscript {0}
9676
97- - name : Remove depends.Rds
77+ - name : Show session curl info
9878 run : |
99- unlink("depends.Rds" )
79+ print(curl::curl_version() )
10080shell : Rscript {0}
10181
102- - name : Check package
103- env :
104- _R_CHECK_CRAN_INCOMING_ : false
105- run : rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
106- shell : Rscript {0}
107-
108- - name : Show testthat output
109- if : always()
110- run : find check -name 'testthat.Rout*' -exec cat '{}' \; || true
111- shell : bash
112-
113- - name : Upload check results
114- if : failure()
115- uses : actions/upload-artifact@main
82+ - uses : r-lib/actions/check-r-package@v2
11683 with :
117- name : ${{ runner.os }}-r${{ matrix.config.r }}-results
118- path : check
84+ upload-snapshots : true
11985
12086 - name : Test coverage
12187 run : |
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