Match default for PCA derivation

smlmbrt · smlmbrt · commit d9dfe1075a73 · 2024-03-25T22:17:31.000Z
diff --git a/pgscatalog.match/src/pgscatalog/match/cli/intersect_cli.py b/pgscatalog.match/src/pgscatalog/match/cli/intersect_cli.py
@@ -211,7 +211,7 @@ def parse_args(args=None):
     parser.add_argument(
         "--maf_target",
         dest="maf_filter",
-        default=0.1,
+        default=0.05,
         required=False,
         help="Filter: Minimum minor Allele Frequency for PCA eligibility",
     )

Original file line number	Diff line number	Diff line change
`@@ -211,7 +211,7 @@ def parse_args(args=None):`
`211`	`211`	`parser.add_argument(`
`212`	`212`	`"--maf_target",`
`213`	`213`	`dest="maf_filter",`
`214`		`- default=0.1,`
	`214`	`+ default=0.05,`
`215`	`215`	`required=False,`
`216`	`216`	`help="Filter: Minimum minor Allele Frequency for PCA eligibility",`
`217`	`217`	`)`