sort test output to get consistent results

Author: nebfield

pgscatalog.matchlib/src/pgscatalog/matchlib/matchresult.py

@@ -101,7 +101,7 @@ class MatchResults(collections.abc.Sequence):
 
     Useful for making matching logs and writing scoring files ready to be used by ``plink2 --score``
 
-    >>> import tempfile, os, glob
+    >>> import tempfile, os, glob, pathlib
     >>> from ._config import Config
     >>> from .variantframe import VariantFrame
     >>> from .scoringfileframe import ScoringFileFrame, match_variants
@@ -129,7 +129,7 @@ class MatchResults(collections.abc.Sequence):
 
     By default, scoring files are written with multiple chromosomes per file:
 
-    >>> combined_paths = glob.glob(foutdir + "/*ALL*")
+    >>> combined_paths = sorted(glob.glob(foutdir + "/*ALL*"), key=lambda x: pathlib.Path(x).stem)
     >>> combined_paths # doctest: +ELLIPSIS
     ['.../goodmatch_ALL_additive_0.scorefile.gz', '.../goodmatch_ALL_dominant_0.scorefile.gz', '.../goodmatch_ALL_recessive_0.scorefile.gz']
     >>> assert len(combined_paths) == 3

pgscatalog.matchlib/src/pgscatalog/matchlib/plinkscorefiles.py

@@ -51,11 +51,12 @@ def merge(self, directory):
         >>> psf  # doctest: +ELLIPSIS
         PlinkScoreFiles([PosixPath('.../goodmatch_1_additive_0.scorefile.gz'), ...])
         >>> psf.merge(foutdir)
-        >>> combined_paths = glob.glob(foutdir + "/*ALL*")
+        >>> combined_paths = sorted(glob.glob(foutdir + "/*ALL*"),  key=lambda x: pathlib.Path(x).stem)
         >>> len(combined_paths)
         3
         >>> combined_paths # doctest: +ELLIPSIS
         ['.../goodmatch_ALL_additive_0.scorefile.gz', '.../goodmatch_ALL_dominant_0.scorefile.gz', '.../goodmatch_ALL_recessive_0.scorefile.gz']
+
         """
         dataset = self._elements[0].stem.split("_")[0]
         for x in self._elements: