add logging config to libraries

Author: nebfield

pgscatalog.calclib/src/pgscatalog/calclib/__init__.py

@@ -0,0 +1,9 @@
+import logging
+
+from .polygenicscore import PolygenicScore
+
+log_fmt = "%(name)s: %(asctime)s %(levelname)-8s %(message)s"
+logging.basicConfig(format=log_fmt, datefmt="%Y-%m-%d %H:%M:%S")
+logger = logging.getLogger(__name__)
+
+__all__ = ["PolygenicScore"]

pgscatalog.matchlib/src/pgscatalog/matchlib/__init__.py

@@ -1,8 +1,14 @@
+import logging
+
 from .variantframe import VariantFrame
 from .scoringfileframe import ScoringFileFrame, match_variants
 from .matchresult import MatchResult, MatchResults
 from .plinkscorefiles import PlinkScoreFiles
 
+log_fmt = "%(name)s: %(asctime)s %(levelname)-8s %(message)s"
+logging.basicConfig(format=log_fmt, datefmt="%Y-%m-%d %H:%M:%S")
+logger = logging.getLogger(__name__)
+
 __all__ = [
     "VariantFrame",
     "ScoringFileFrame",