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@OHDSI

Observational Health Data Sciences and Informatics

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  1. CommonDataModel Public

    Definition and DDLs for the OMOP Common Data Model (CDM)

    HTML 955 461

  2. Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    PLpgSQL 240 75

  3. Atlas Public

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 283 144

  4. Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 40 33

  5. CohortMethod Public

    An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    R 85 63

  6. PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    R 196 90

Repositories

Showing 10 of 329 repositories
  • d2e Public

    Data2Evidence is an end-to-end solution for management of OMOP data - https://data2evidence.org

    TypeScript 17 Apache-2.0 0 0 18 Updated May 16, 2025
  • Eunomia Public

    An R package that facilitates access to a variety of OMOP CDM sample data sets.

    R 44 11 14 3 Updated May 16, 2025
  • CohortIncidence Public

    Contains the Java and R assets to perform Incidence calculations on a CDM

    R 6 3 7 2 Updated May 16, 2025
  • DeepPatientLevelPrediction Public

    An R package for performing patient level prediction using deep learning in an observational database in the OMOP Common Data Model.

    R 13 4 26 (2 issues need help) 1 Updated May 16, 2025
  • 0 Apache-2.0 0 45 0 Updated May 16, 2025
  • omock Public
    HTML 2 Apache-2.0 1 2 1 Updated May 16, 2025
  • ARTEMIS Public
    R 2 Apache-2.0 3 1 0 Updated May 16, 2025
  • ETL-CDMBuilder Public

    ETL-CDMBuilder is a repo containing a .NET Core application to perform ETL to OMOP CDM for multiple databases

    C# 53 Apache-2.0 32 1 3 Updated May 15, 2025
  • MIMIC Public

    MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. This repository contains the ETL to the OMOP CDM.

    Python 76 Apache-2.0 26 22 3 Updated May 15, 2025
  • OmopSketch Public
    R 3 Apache-2.0 0 10 0 Updated May 15, 2025