diff --git a/buildingmotif/api/views/library.py b/buildingmotif/api/views/library.py index fa2b21f75..ef6f0209e 100644 --- a/buildingmotif/api/views/library.py +++ b/buildingmotif/api/views/library.py @@ -9,6 +9,9 @@ blueprint = Blueprint("libraries", __name__) get_shape_query = """ + PREFIX sh: + PREFIX rdfs: + PREFIX skos: SELECT ?shape ?label ?desc WHERE { ?shape a sh:NodeShape ; diff --git a/buildingmotif/building_motif/building_motif.py b/buildingmotif/building_motif/building_motif.py index c46e21524..d8805d93f 100644 --- a/buildingmotif/building_motif/building_motif.py +++ b/buildingmotif/building_motif/building_motif.py @@ -104,8 +104,8 @@ def setup_logging(self, log_level): engine_logger = logging.getLogger("sqlalchemy.engine") pool_logger = logging.getLogger("sqlalchemy.pool") - engine_logger.setLevel(logging.DEBUG) - pool_logger.setLevel(logging.DEBUG) + engine_logger.setLevel(logging.WARN) + pool_logger.setLevel(logging.WARN) stream_handler = logging.StreamHandler() stream_handler.setLevel(log_level) diff --git a/buildingmotif/shape_builder/__init__.py b/buildingmotif/shape_builder/__init__.py new file mode 100644 index 000000000..f5d735b53 --- /dev/null +++ b/buildingmotif/shape_builder/__init__.py @@ -0,0 +1 @@ +from buildingmotif.shape_builder.shape import NodeShape, PropertyShape # noqa diff --git a/buildingmotif/shape_builder/shape.py b/buildingmotif/shape_builder/shape.py new file mode 100644 index 000000000..4484e3da0 --- /dev/null +++ b/buildingmotif/shape_builder/shape.py @@ -0,0 +1,354 @@ +from typing import List, Optional, Tuple, Union + +from rdflib import RDF, BNode, Graph, Literal, URIRef +from rdflib.collection import Collection +from rdflib.term import Node + +from buildingmotif.namespaces import CONSTRAINT, SH, A, bind_prefixes + + +class Shape(Graph): + """Base class for constructing shapes programatically""" + + def __init__( + self, + identifier: Optional[Union[Node, str]] = None, + message: Optional[str] = None, + ) -> None: + """ + + :param identifier: id for shape + :type identifier: Optional[Union[Node, str]] + :param message: sh:message annotation + :type message: str + """ + super().__init__(identifier=identifier) + bind_prefixes(self) + + if message: + self.add((self.identifier, SH["message"], Literal(message))) + + def add_property(self, property: URIRef, object: Node): + """Add property to shape + + :param property: ref of property + :type property: URIRef + :param object: ref of object + :type object: Node""" + # This same functionality could be added with just use of add. + # This design is useful to allow adding properties in the + # builder paradigm. + self.add((self, property, object)) + + return self + + def add_list_property( + self, property: URIRef, nodes: Union[List[Node], Tuple[Node, ...]] + ): + """Add property which references list to shape + + :param property: ref of property + :type property: URIRef + :param nodes: nodes to include in list + :type nodes: Union[List[Node], Tuple[Node, ...]]""" + identifier = BNode() + Collection(self, identifier, nodes) + + self.add((self, property, identifier)) + + return self + + def OR(self, *nodes: Node): + """add OR property + + :param nodes: list of nodes to OR + :type nodes: Union[List[Node], Tuple[Node, ...]] + """ + self.add_list_property(SH["or"], nodes) + return self + + def AND(self, *nodes: Node): + """add AND property + + :param nodes: list of nodes to AND + :type nodes: Union[List[Node], Tuple[Node, ...]] + """ + self.add_list_property(SH["and"], nodes) + return self + + def NOT(self, node: Node): + """add NOT property + + :param nodes: list of nodes to NOT + :type nodes: Union[List[Node], Tuple[Node, ...]] + """ + self.add((self, SH["not"], node)) + + return self + + def XONE(self, *nodes: Node): + """add XONE property + + :param nodes: list of nodes to XONE + :type nodes: Union[List[Node], Tuple[Node, ...]] + """ + self.add_list_property(SH["xone"], nodes) + return self + + def add(self, triple: Tuple[Node, Node, Node]): + (s, p, o) = triple + if isinstance(o, Shape): + # if the object being added is of type Shape + # add the whole graph to this graph + self += o + o = o.identifier + if s == self: + s = s.identifier + triple = (s, p, o) + return super().add(triple) + + +class NodeShape(Shape): + """Class for constructing Node Shapes programatically""" + + def __init__( + self, + identifier: Optional[Union[Node, str]] = None, + message: Optional[str] = None, + ) -> None: + """ + + :param identifier: id for shape + :type identifier: Optional[Union[Node, str]] + :param message: sh:message annotation + :type message: str + """ + super().__init__(identifier=identifier, message=message) + + self.add((self, A, SH["NodeShape"])) + + def of_class(self, class_: Node, active=False): + """Add constraint that target much be of a certain class + + :param class_: class of target + :type class_: Node + :param active: should shape actively target the class or not + :type active: bool""" + predicate = SH["targetClass"] if active else SH["class"] + + self.add((self, predicate, class_)) + self.add((self, CONSTRAINT["class"], class_)) + + return self + + def always_run(self): + """Add blank node target + This target insures that the shape will always be evaluated. + If the shape has properties this can cause it to fail.""" + self.add((self, SH["targetNode"], BNode())) + return self + + def count(self, exactly: int = None): + """Add an exact count constraint. + + :param exactly: exact number of instances of class to match + :type exactly: int""" + if exactly: + self.add((self, CONSTRAINT["exactCount"], Literal(exactly))) + return self + + def has_property(self, property: Union[Node, URIRef]): + """Add property constraint. + + :param property: property shape or property to add constraint for + :type property: Union[Node, URIRef]""" + if isinstance(property, URIRef): + property = PropertyShape().has_path(property) + + self.add((self, SH["property"], property)) + + return self + + +class PropertyShape(Shape): + def __init__( + self, + identifier: Optional[Union[Node, str]] = None, + message: Optional[str] = None, + ) -> None: + """ + + :param identifier: id for shape + :type identifier: Optional[Union[Node, str]] + :param message: sh:message annotation + :type message: str + """ + super().__init__(identifier=identifier, message=message) + + self.add((self, RDF.type, SH["PropertyShape"])) + + def has_path( + self, + path: Node, + zero_or_one: bool = False, + zero_or_more: bool = False, + one_or_more: bool = False, + ) -> "PropertyShape": + """Add path constraint to shape. + zero_or_one, zero_or_more, and one_or_more flags are mutually exclusive + + :param path: path to add constraint for + :type path: Node + :param zero_or_one: match zero or one instances of path + :type zero_or_one: bool + :param zero_or_more: match zero or more instances of path + :type zero_or_more: bool + :param one_or_more: match one or more instances of path + :type one_or_more: bool""" + + if zero_or_one or zero_or_more or one_or_more: + path_constraint = None + if zero_or_one: + path_constraint = SH["path-zero-or-one"] + elif zero_or_more: + path_constraint = SH["path-zero-or-more"] + elif one_or_more: + path_constraint = SH["path-one-or-more"] + self.add((self, SH["path"], Shape().add_property(path_constraint, path))) + else: + self.add((self, SH["path"], path)) + + return self + + def matches( + self, + target: Node, + type: URIRef, + min: int = None, + max: int = None, + exactly: int = None, + qualified: bool = False, + ): + """Add target matches constraint to property shape + + :param target: target node to specify what should be matched, usually shape or class + :type target: Node + :param type: sh:class or sh:node + :type type: URIRef + :param min: min count of matched entities + :type min: int + :param max: max count of matched entities + :type max: int + :param exactly: exact count of matched entities (takes precidence over min/max) + :type exactly: int + :param qualified: Is this property qualified or universal + :type qualified: bool + + """ + if min is None and max is None and exactly is None: + if qualified: + raise ValueError("min, max or exactly must have a value") + else: + self.add((self, type, target)) + return self + + if exactly is not None: + min = max = exactly + + if qualified: + blank_node = BNode() + self.add((blank_node, type, target)) + self.add((self, SH["qualifiedValueShape"], blank_node)) + if min is not None: + self.add((self, SH["qualifiedMinCount"], Literal(min))) + if max is not None: + self.add((self, SH["qualifiedMaxCount"], Literal(max))) + else: + self.add((self, type, target)) + if min is not None: + self.add((self, SH["minCount"], Literal(min))) + if max is not None: + self.add((self, SH["maxCount"], Literal(max))) + return self + + def matches_class( + self, + class_: URIRef, + min: int = None, + max: int = None, + exactly: int = None, + qualified=False, + ): + """Add target matches class constraint to property shape + + :param class_: target class what should be matched + :type class_: Node + :param min: min count of matched entities + :type min: int + :param max: max count of matched entities + :type max: int + :param exactly: exact count of matched entities (takes precidence over min/max) + :type exactly: int + :param qualified: Is this property qualified or universal + :type qualified: bool + """ + return self.matches(class_, SH["class"], min, max, exactly, qualified) + + def matches_shape( + self, + shape: Node, + min: int = None, + max: int = None, + exactly: int = None, + qualified=False, + ): + """Add target matches shape constraint to property shape + + :param shape: target shape what should be matched + :type shape: Node + :param min: min count of matched entities + :type min: int + :param max: max count of matched entities + :type max: int + :param exactly: exact count of matched entities (takes precidence over min/max) + :type exactly: int + :param qualified: Is this property qualified or universal + :type qualified: bool + """ + return self.matches(shape, SH["node"], min, max, exactly, qualified) + + +def OR(*nodes: Node) -> Shape: + """add OR property + + :param nodes: list of nodes to OR + :type nodes: Union[List[Node], Tuple[Node, ...]] + """ + return Shape().OR(*nodes) + + +def AND(*nodes: Node) -> Shape: + """add AND property + + :param nodes: list of nodes to AND + :type nodes: Union[List[Node], Tuple[Node, ...]] + """ + return Shape().AND(*nodes) + + +def NOT(node: Node) -> Shape: + """add NOT property + + :param nodes: list of nodes to NOT + :type nodes: Union[List[Node], Tuple[Node, ...]] + """ + return Shape().NOT(node) + + +def XONE(*nodes: Node) -> Shape: + """add XONE property + + :param nodes: list of nodes to XONE + :type nodes: Union[List[Node], Tuple[Node, ...]] + """ + return Shape().XONE(*nodes) diff --git a/libraries/brick/Brick-full.ttl b/libraries/brick/Brick-full.ttl index 557085f20..a5aa3b1a3 100644 --- a/libraries/brick/Brick-full.ttl +++ b/libraries/brick/Brick-full.ttl @@ -24645,7 +24645,17 @@ sosa:ObservableProperty a owl:Class . sdo:sameAs ] ; rdfs:isDefinedBy ; rdfs:seeAlso ; - owl:versionInfo "1.3.0" . + owl:versionInfo "1.3.0" ; + sh:declare [ sh:namespace "http://www.w3.org/2002/07/owl#"^^xsd:anyURI ; + sh:prefix "owl" ], + [ sh:namespace "http://www.w3.org/2000/01/rdf-schema#"^^xsd:anyURI ; + sh:prefix "rdfs" ], + [ sh:namespace "https://brickschema.org/schema/Brick#"^^xsd:anyURI ; + sh:prefix "brick" ], + [ sh:namespace "http://www.w3.org/ns/shacl#"^^xsd:anyURI ; + sh:prefix "sh" ], + [ sh:namespace "http://www.w3.org/1999/02/22-rdf-syntax-ns#"^^xsd:anyURI ; + sh:prefix "rdf" ] . brick:AED a owl:Class, sh:NodeShape ; diff --git a/notebooks/Shape_Builder.ipynb b/notebooks/Shape_Builder.ipynb new file mode 100644 index 000000000..d32d63f0a --- /dev/null +++ b/notebooks/Shape_Builder.ipynb @@ -0,0 +1,199 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 1, + "metadata": {}, + "outputs": [], + "source": [ + "from buildingmotif.shape_builder.shape import Shape, NodeShape, PropertyShape, OR, AND, NOT, XONE\n", + "from buildingmotif.namespaces import BRICK, SH, bind_prefixes\n", + "from rdflib.namespace import Namespace\n", + "from rdflib import Graph, URIRef\n", + "BLDG = Namespace(\"urn:building\")\n", + "SHAPES = Namespace(\"urn:shapes#\")" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "@prefix brick: .\n", + "@prefix rdf: .\n", + "@prefix sh: .\n", + "@prefix xsd: .\n", + "\n", + " a sh:NodeShape ;\n", + " sh:or ( ) .\n", + "\n", + " a sh:NodeShape ;\n", + " sh:property [ a sh:PropertyShape ;\n", + " sh:minCount 0 ;\n", + " sh:node ;\n", + " sh:path [ sh:path-one-or-more brick:feeds ] ] .\n", + "\n", + " a sh:PropertyShape ;\n", + " sh:minCount 0 ;\n", + " sh:node [ sh:or ( ) ] ;\n", + " sh:path [ sh:path-one-or-more brick:feeds ],\n", + " [ sh:path-zero-or-one brick:hasPart ] .\n", + "\n", + " a sh:PropertyShape ;\n", + " sh:class brick:Occcupancy_Sensor ;\n", + " sh:minCount 0 ;\n", + " sh:path brick:hasPoint .\n", + "\n", + " a sh:NodeShape ;\n", + " sh:class brick:Room ;\n", + " sh:property [ a sh:PropertyShape ;\n", + " sh:class brick:Occupancy_Sensor ;\n", + " sh:minCount 1 ;\n", + " sh:path brick:hasPoint ] .\n", + "\n", + " a sh:NodeShape ;\n", + " sh:class brick:HVAC_Zone ;\n", + " sh:property [ a sh:PropertyShape ;\n", + " sh:class brick:Occupancy_Sensor ;\n", + " sh:minCount 1 ;\n", + " sh:path brick:hasPoint ] .\n", + "\n", + " a sh:NodeShape ;\n", + " sh:class brick:HVAC_Zone ;\n", + " sh:property [ a sh:PropertyShape ;\n", + " sh:minCount 1 ;\n", + " sh:node [ a sh:NodeShape ;\n", + " sh:class brick:Room ;\n", + " sh:property [ a sh:PropertyShape ;\n", + " sh:minCount 1 ;\n", + " sh:node [ a sh:NodeShape ;\n", + " sh:class brick:Open_Close_Status ] ;\n", + " sh:path brick:hasPoint ] ] ;\n", + " sh:path brick:hasPart ] .\n", + "\n", + "\n" + ] + } + ], + "source": [ + "shapes = Graph()\n", + "zone_with_room = (NodeShape(SHAPES[\"zone-with-room\"])\n", + " .of_class(BRICK[\"HVAC_Zone\"])\n", + " .has_property(PropertyShape()\n", + " .has_path(BRICK[\"hasPart\"])\n", + " .matches_shape(NodeShape()\n", + " .of_class(BRICK[\"Room\"])\n", + " .has_property(PropertyShape()\n", + " .has_path(BRICK[\"hasPoint\"])\n", + " .matches_shape(NodeShape()\n", + " .of_class(BRICK[\"Open_Close_Status\"]),\n", + " min=1\n", + " )\n", + " ),\n", + " min=1\n", + " )\n", + " ))\n", + "shapes += zone_with_room\n", + "window_switch = (NodeShape(SHAPES[\"window-switch\"])\n", + " .has_property(PropertyShape()\n", + " .has_path(BRICK[\"feeds\"], one_or_more=True)\n", + " .matches_shape(zone_with_room, min=0)\n", + " )\n", + " )\n", + "shapes += window_switch\n", + "zone_with_occ_sensor = (NodeShape(SHAPES[\"zone-with-occ-sensor\"])\n", + " .of_class(BRICK[\"HVAC_Zone\"])\n", + " .has_property(\n", + " PropertyShape()\n", + " .has_path(BRICK[\"hasPoint\"])\n", + " .matches_class(BRICK[\"Occupancy_Sensor\"], min=1)\n", + " )\n", + ")\n", + "shapes += zone_with_occ_sensor\n", + "room_with_occ_sensor = (NodeShape(SHAPES[\"room-with-occ-sensor\"])\n", + " .of_class(BRICK[\"Room\"])\n", + " .has_property(\n", + " PropertyShape()\n", + " .has_path(BRICK[\"hasPoint\"])\n", + " .matches_class(BRICK[\"Occupancy_Sensor\"], min=1)\n", + " )\n", + ")\n", + "shapes += room_with_occ_sensor\n", + "occupancy_sensor_1 = (PropertyShape(SHAPES[\"ocupancy-sensor-1\"])\n", + " .has_path(BRICK[\"hasPoint\"])\n", + " .matches_class(BRICK[\"Occcupancy_Sensor\"], min=0)\n", + " )\n", + "shapes += occupancy_sensor_1\n", + "occupancy_sensor_2 = (PropertyShape(SHAPES[\"occupancy-sensor-2\"])\n", + " .has_path(BRICK[\"feeds\"], one_or_more=True)\n", + " .has_path(BRICK[\"hasPart\"], zero_or_one=True)\n", + " .matches_shape(OR(zone_with_occ_sensor, room_with_occ_sensor), min=0)\n", + ")\n", + "shapes += occupancy_sensor_2\n", + "occupancy_sensor = NodeShape(SHAPES[\"occupancy-sensor\"]).OR(occupancy_sensor_1, occupancy_sensor_2)\n", + "shapes += occupancy_sensor\n", + "print((shapes.serialize(format=\"turtle\")))\n" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "@prefix sh: .\n", + "\n", + " a sh:NodeShape ;\n", + " sh:message \"hello\" .\n", + "\n", + "\n" + ] + } + ], + "source": [ + "print(NodeShape(URIRef(\"http://example.org/shapes#shape\"), \"hello\").serialize())" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3.9.0 ('.venv': poetry)", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.8.1" + }, + "orig_nbformat": 4, + "vscode": { + "interpreter": { + "hash": "15fae041f31e3c236ca4e007ba84180412c78f76afbcc47bd25b3db75fd5ecba" + } + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/poetry.lock b/poetry.lock index 4495791eb..4d2b670fd 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.4.1 and should not be changed by hand. +# This file is automatically @generated by Poetry and should not be changed by hand. 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nbmake = "^1.3.0" rdflib-sqlalchemy = "^0.5.3" -pyshacl = "^0.19.1" +pyshacl = "^0.21.0" alembic = "^1.8.0" Flask = "^2.1.2" Flask-API = "^3.0.post1" diff --git a/tests/unit/shape_builder/test_shape_builder.py b/tests/unit/shape_builder/test_shape_builder.py new file mode 100644 index 000000000..59b9805b9 --- /dev/null +++ b/tests/unit/shape_builder/test_shape_builder.py @@ -0,0 +1,106 @@ +import pytest +from rdflib import SH, BNode, Namespace + +from buildingmotif import BuildingMOTIF +from buildingmotif.dataclasses import Model +from buildingmotif.dataclasses.library import Library +from buildingmotif.namespaces import BRICK, A +from buildingmotif.shape_builder import NodeShape, PropertyShape + + +@pytest.fixture +def constraints_library(bm: BuildingMOTIF): + return Library.load(ontology_graph="constraints/constraints.ttl") + + +# test #1 +# - create empty model +# - create shape that looks for one equip +# - assert fails validation +# - add equip to model +# - assert passes validation +def test_node_shape(constraints_library: Library): + model_namespace = Namespace("http://example.org/") + shapes_namespace = Namespace("http://exampleshapes.org/") + model = Model.create(name=model_namespace) + + # Make shape which looks for one brick:AHU + ahu_shape = ( + NodeShape(shapes_namespace["ahu_shape"]) + .of_class(BRICK["AHU"], active=True) + .count(exactly=1) + .always_run() + ) + ahu_shape.add_property(SH["targetNode"], BNode()) + model.get_manifest().add_graph(ahu_shape) + + # Validate shape against model, expected to fail + validation_context = model.validate( + [model.get_manifest(), constraints_library.get_shape_collection()] + ) + assert validation_context.valid == False # noqa + + # Add AHU to graph + model.add_triples((model_namespace["AHU_1"], A, BRICK["AHU"])) + + # Validate shape against model, expected to pass + validation_context = model.validate( + [model.get_manifest(), constraints_library.get_shape_collection()] + ) + assert validation_context.valid == True # noqa + + +# Test 2 +# - Create Model with AHU +# - Create AHU shape +# - Add PropertyShape and attach to AHU Shape +# - Validate and Fail +# - Add point +# - Validate and Pass +def test_property_shape(constraints_library: Library): + model_namespace = Namespace("http://example.org/") + shapes_namespace = Namespace("http://exampleshapes.org/") + model = Model.create(name=model_namespace) + + # Add AHU to graph + model.add_triples((model_namespace["AHU_1"], A, BRICK["AHU"])) + + # Make shape which looks for one brick:AHU with an OATS + ahu_shape = ( + NodeShape(shapes_namespace["ahu_shape"]) + .of_class(BRICK["AHU"], active=True) + .count(1) + .has_property( + PropertyShape() + .has_path(BRICK["hasPoint"]) + .matches_class(BRICK["Outside_Air_Temperature_Sensor"], exactly=1) + ) + ) + + application_shape = ( + NodeShape(shapes_namespace["application_shape"]) + .of_class(BRICK["AHU"], active=True) + .count(1) + .always_run() + ) + + # Add shapes to graph + model.get_manifest().add_graph(ahu_shape) + model.get_manifest().add_graph(application_shape) + + # Validate shape against model, expected to fail + validation_context = model.validate( + [model.get_manifest(), constraints_library.get_shape_collection()] + ) + assert validation_context.valid == False # noqa + + model.add_triples( + (model_namespace["OATS_1"], A, BRICK["Outside_Air_Temperature_Sensor"]), + (model_namespace["AHU_1"], BRICK["hasPoint"], model_namespace["OATS_1"]), + ) + + # Validate shape against model, expected to pass + validation_context = model.validate( + [model.get_manifest(), constraints_library.get_shape_collection()] + ) + assert validation_context.valid == True # noqa diff --git a/tests/unit/test_utils.py b/tests/unit/test_utils.py index b658cf42a..64d4ea11f 100644 --- a/tests/unit/test_utils.py +++ b/tests/unit/test_utils.py @@ -196,9 +196,15 @@ def test_inline_sh_and(bm: BuildingMOTIF): in ctx.report_string or "Value class is not in classes (brick:Class3, brick:Class2)" in ctx.report_string + or "Value class is not in classes (, )" + in ctx.report_string + or "Value class is not in classes (, )" + in ctx.report_string ), ctx.report_string assert ( "Less than 1 values on ->brick:relationship" in ctx.report_string + or "Less than 1 values on ->" + in ctx.report_string ) @@ -244,7 +250,13 @@ def test_inline_sh_node(bm: BuildingMOTIF): in ctx.report_string or "Value class is not in classes (brick:Class3, brick:Class2)" in ctx.report_string - ) + or "Value class is not in classes (, )" + in ctx.report_string + or "Value class is not in classes (, )" + in ctx.report_string + ), ctx.report_string assert ( "Less than 1 values on ->brick:relationship" in ctx.report_string + or "Less than 1 values on ->" + in ctx.report_string )