Added coupling of GOCART aerosols with radiation related to issue#899… (#525)

* Added coupling of GOCART aerosols with radiation related to issue#899 in NCAR/ccpp-physics

* Updated ccpp/physics to include Barry Baker's updates for wet deposition in the Thompson scheme

* Updated physics/rte-rrtmgp with the latest commit in ccpp/physics

* Update ccpp/physics to include the updates of precipitation fluxes outputs in the Thompson microphysics scheme

* Updated ccpp/physics for fixing a bug in mp_thompson.F90

Author: ChunxiZhang-NOAA

ccpp/data/GFS_typedefs.F90

@@ -1304,6 +1304,21 @@ module GFS_typedefs
     integer              :: ntchm           !< number of prognostic chemical tracers (advected)
     integer              :: ntchs           !< tracer index for first prognostic chemical tracer
     integer              :: ntche           !< tracer index for last prognostic chemical tracer
+    integer              :: ntdu1           !< tracer index for dust bin1
+    integer              :: ntdu2           !< tracer index for dust bin2
+    integer              :: ntdu3           !< tracer index for dust bin3
+    integer              :: ntdu4           !< tracer index for dust bin4
+    integer              :: ntdu5           !< tracer index for dust bin5
+    integer              :: ntss1           !< tracer index for sea salt bin1
+    integer              :: ntss2           !< tracer index for sea salt bin2
+    integer              :: ntss3           !< tracer index for sea salt bin3
+    integer              :: ntss4           !< tracer index for sea salt bin4
+    integer              :: ntss5           !< tracer index for sea salt bin5
+    integer              :: ntsu            !< tracer index for sulfate
+    integer              :: ntbcl           !< tracer index for BCPHILIC
+    integer              :: ntbcb           !< tracer index for BCPHOBIC
+    integer              :: ntocl           !< tracer index for OCPHILIC
+    integer              :: ntocb           !< tracer index for OCPHOBIC
     integer              :: ndchm           !< number of diagnostic chemical tracers (not advected)
     integer              :: ndchs           !< tracer index for first diagnostic chemical tracer
     integer              :: ndche           !< tracer index for last diagnostic chemical tracer
@@ -3833,6 +3848,8 @@ subroutine control_initialize (Model, nlunit, fn_nml, me, master, &
     if (iaer/1000 == 1 .or. Model%iccn == 2) then
       Model%iaerclm = .true.
       ntrcaer = ntrcaerm
+    else if (iaer/1000 == 2) then
+      ntrcaer = ntrcaerm
     else
       ntrcaer = 1
     endif
@@ -4496,6 +4513,24 @@ subroutine control_initialize (Model, nlunit, fn_nml, me, master, &
     allocate(Model%dtidx(Model%ntracp100,Model%nprocess))
     Model%dtidx = -99
 
+    if(Model%ntchm>0) then
+      Model%ntdu1 = get_tracer_index(Model%tracer_names, 'dust1', Model%me, Model%master, Model%debug)
+      Model%ntdu2 = get_tracer_index(Model%tracer_names, 'dust2', Model%me, Model%master, Model%debug)
+      Model%ntdu3 = get_tracer_index(Model%tracer_names, 'dust3', Model%me, Model%master, Model%debug)
+      Model%ntdu4 = get_tracer_index(Model%tracer_names, 'dust4', Model%me, Model%master, Model%debug)
+      Model%ntdu5 = get_tracer_index(Model%tracer_names, 'dust5', Model%me, Model%master, Model%debug)
+      Model%ntss1 = get_tracer_index(Model%tracer_names, 'seas1', Model%me, Model%master, Model%debug)
+      Model%ntss2 = get_tracer_index(Model%tracer_names, 'seas2', Model%me, Model%master, Model%debug)
+      Model%ntss3 = get_tracer_index(Model%tracer_names, 'seas3', Model%me, Model%master, Model%debug)
+      Model%ntss4 = get_tracer_index(Model%tracer_names, 'seas4', Model%me, Model%master, Model%debug)
+      Model%ntss5 = get_tracer_index(Model%tracer_names, 'seas5', Model%me, Model%master, Model%debug)
+      Model%ntsu  = get_tracer_index(Model%tracer_names, 'so4',   Model%me, Model%master, Model%debug)
+      Model%ntbcb = get_tracer_index(Model%tracer_names, 'bc1',   Model%me, Model%master, Model%debug)
+      Model%ntbcl = get_tracer_index(Model%tracer_names, 'bc2',   Model%me, Model%master, Model%debug)
+      Model%ntocb = get_tracer_index(Model%tracer_names, 'oc1',   Model%me, Model%master, Model%debug)
+      Model%ntocl = get_tracer_index(Model%tracer_names, 'oc2',   Model%me, Model%master, Model%debug)
+    end if
+
     if(ldiag3d) then
        ! Flags used to turn on or off tracer "causes"
        have_pbl_edmf = Model%hybedmf .or. Model%satmedmf .or. Model%do_mynnedmf

ccpp/data/GFS_typedefs.meta

@@ -5532,6 +5532,96 @@
   units = index
   dimensions = ()
   type = integer
+[ntdu1]
+  standard_name = index_for_dust_bin1
+  long_name = index for dust bin1
+  units = index
+  dimensions = ()
+  type = integer
+[ntdu2]
+  standard_name = index_for_dust_bin2
+  long_name = index for dust bin2
+  units = index
+  dimensions = ()
+  type = integer
+[ntdu3]
+  standard_name = index_for_dust_bin3
+  long_name = index for dust bin3
+  units = index
+  dimensions = ()
+  type = integer
+[ntdu4]
+  standard_name = index_for_dust_bin4
+  long_name = index for dust bin4
+  units = index
+  dimensions = ()
+  type = integer
+[ntdu5]
+  standard_name = index_for_dust_bin5
+  long_name = index for dust bin5
+  units = index
+  dimensions = ()
+  type = integer
+[ntss1]
+  standard_name = index_for_seasalt_bin1
+  long_name = index for seasalt bin1
+  units = index
+  dimensions = ()
+  type = integer
+[ntss2]
+  standard_name = index_for_seasalt_bin2
+  long_name = index for seasalt bin2
+  units = index
+  dimensions = ()
+  type = integer
+[ntss3]
+  standard_name = index_for_seasalt_bin3
+  long_name = index for seasalt bin3
+  units = index
+  dimensions = ()
+  type = integer
+[ntss4]
+  standard_name = index_for_seasalt_bin4
+  long_name = index for seasalt bin4
+  units = index
+  dimensions = ()
+  type = integer
+[ntss5]
+  standard_name = index_for_seasalt_bin5
+  long_name = index for seasalt bin5
+  units = index
+  dimensions = ()
+  type = integer
+[ntsu]
+  standard_name = index_for_sulfate
+  long_name = index for sulfate
+  units = index
+  dimensions = ()
+  type = integer
+[ntbcb]
+  standard_name = index_for_bcphobic
+  long_name = index for bcphobic
+  units = index
+  dimensions = ()
+  type = integer
+[ntbcl]
+  standard_name = index_for_bcphilic
+  long_name = index for bcphilic 
+  units = index
+  dimensions = ()
+  type = integer
+[ntocb]
+  standard_name = index_for_ocphobic
+  long_name = index for ocphobic
+  units = index
+  dimensions = ()
+  type = integer
+[ntocl]
+  standard_name = index_for_ocphilic
+  long_name = index for ocphilic 
+  units = index
+  dimensions = ()
+  type = integer
 [ndchm]
   standard_name = number_of_diagnostic_chemical_tracers
   long_name = number of diagnostic chemical tracers
@@ -6578,9 +6668,9 @@
   type = real
   kind = kind_phys
 [aer_nm]
-  standard_name = mass_number_concentration_of_aerosol_from_gocart_climatology
-  long_name = GOCART aerosol climatology number concentration
-  units = kg-1
+  standard_name = mass_mixing_ratio_of_aerosol_from_gocart_or_merra2
+  long_name = mass mixing ratio of aerosol from gocart or merra2
+  units = kg kg-1
   dimensions = (horizontal_loop_extent,vertical_layer_dimension,number_of_aerosol_tracers_MG)
   type = real
   kind = kind_phys