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README.md

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@@ -10,7 +10,7 @@ By using PacBio HiFi and Hi-C data only we were able to generate phased chromoso
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![alt text](figures/pipeline.png "Pipeline overview")
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Commands used to generate the assembly and annotation are located in [`scripts`](https://github.com/NIB-SI/desiree-genome/scripts).
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Commands used to generate the assembly and annotation are located in [`scripts`](https://github.com/NIB-SI/desiree-genome/tree/main/scripts).
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1. `assembly.txt` - assembly of initial phased sets of contigs with *hifiasm*
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2. `scaffolding.txt` - scaffolding to chromosomes with *YaHs*
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## Citation
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If you are using this genome in your research, please cite:
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-- add biorxiv CITATION
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**Haplotype-resolved genome assembly of the tetraploid potato cultivar Desiree**
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Godec T, Beier S, Rodriguez-Granados N, Sasidharan R, Abdelhakim L, Teige M, Usadel B, Gruden K, Petek M,
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*bioRxiv 2025.01.14.631659*
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doi: https://doi.org/10.1101/2025.01.14.631659
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