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changes to model solver c++

Will-Raymondpushed 1 commit to refactor2024 • 624cb79…c1eb1d4 • 
25 days ago

Commenting makefigs.py

Will-Raymondpushed 1 commit to refactor2024 • 2092a3f…624cb79 • 
25 days ago

Merge branch 'refactor2024' of https://github.com/MunskyGroup/rSNAPsim …

Will-Raymondpushed 2 commits to refactor2024 • 35180ee…2092a3f • 
25 days ago

Update README.md

Will-Raymondpushed 1 commit to refactor2024 • a8978dc…35180ee • 
25 days ago

Update README.md

Will-Raymondpushed 1 commit to refactor2024 • bff72e5…a8978dc • 
25 days ago

Added labels for cap vs ires for figure 3

Will-Raymondpushed 1 commit to refactor2024 • 1ba788b…bff72e5 • 
25 days ago

Changes to make figs, and model maker

Will-Raymondpushed 1 commit to refactor2024 • 8f91adb…1ba788b • 
25 days ago

Update makefigs.py

Will-Raymondpushed 1 commit to refactor2024 • 312381c…8f91adb • 
on Feb 14

removed duplicate classes in translational models

Will-Raymondpushed 1 commit to refactor2024 • d093694…312381c • 
on Feb 14

fixed npz loading

Will-Raymondpushed 1 commit to refactor2024 • 55cdc2f…d093694 • 
on Feb 14

Added two saving formats to custom solution objects

Will-Raymondpushed 1 commit to refactor2024 • 029e59a…55cdc2f • 
on Feb 11

changes to makefigs.py

Will-Raymondpushed 1 commit to refactor2024 • 89185cc…029e59a • 
on Feb 11

update make figs

Will-Raymondpushed 1 commit to refactor2024 • 68fb311…89185cc • 
on Feb 4

added figure making script v1 to paper_figures, added current version…

Will-Raymondpushed 1 commit to refactor2024 • 814a5ff…68fb311 • 
on Feb 4

added method to condense solution ribosome agent arrays after simulat…

Will-Raymondpushed 1 commit to refactor2024 • 6d456da…814a5ff • 
on Dec 12, 2024

Update TSIX-XIST.ipynb

Will-Raymondpushed 1 commit to refactor2024 • 3be88c5…6d456da • 
on Dec 12, 2024

moved the TSIX-XIST notebook to interactive notebooks

Will-Raymondpushed 1 commit to refactor2024 • b292232…3be88c5 • 
on Dec 12, 2024

Update Example_Usage.ipynb

Will-Raymondpushed 1 commit to refactor2024 • bae807e…b292232 • 
on Dec 12, 2024

More models added to the example usage notebook

Will-Raymondpushed 1 commit to refactor2024 • 2b48b7b…bae807e • 
on Dec 12, 2024

adding to the example usage notebook

Will-Raymondpushed 1 commit to refactor2024 • fa08ba0…2b48b7b • 
on Dec 12, 2024

changes to notebooks

Will-Raymondpushed 1 commit to refactor2024 • 85adec9…fa08ba0 • 
on Dec 10, 2024

Update Example_Usage.ipynb

Will-Raymondpushed 1 commit to refactor2024 • 1295913…85adec9 • 
on Dec 6, 2024

Update Example_Usage.ipynb

Will-Raymondpushed 1 commit to refactor2024 • a8a10ba…1295913 • 
on Dec 5, 2024

fixed a bug in CDS object where probe matrices were not integers

Will-Raymondpushed 1 commit to refactor2024 • 972b603…a8a10ba • 
on Dec 5, 2024

added list support for stepping rates of the solver and the initial u…

Will-Raymondpushed 1 commit to refactor2024 • 4634301…972b603 • 
on Dec 5, 2024

created new branch for refactoring changes before project handoff

Will-Raymondcreated refactor2024 • 4634301 • 
on Dec 5, 2024

added multiline fasta test

Will-Raymondpushed 1 commit to packaged • 60033d7…7da1c7a • 
on Aug 27, 2024

Added unit test for loading .dna files with our dna file parser

Will-Raymondpushed 1 commit to packaged • dc39631…60033d7 • 
on Aug 26, 2024

added preliminary .dna file parsing

Will-Raymondpushed 1 commit to packaged • 3c83c49…dc39631 • 
on Aug 13, 2024

Adding in new model maker files

Will-Raymondpushed 1 commit to packaged • 39b69ee…3c83c49 • 
on Jul 17, 2024