Release version 0.2.2

Building Linux release failed as the .deb file is too large including nvidia cuda runtime for github.

We need to build .deb installer by ourselves using release/one_click_linux_gui/create_installer_linux.sh.

Release version 0.2.0

update HLA nbs

Release version 0.1.7

badge for pretrain-models

Release version 0.1.6

Merge pull request #56 from MannLabs/development

Bump version: 0.1.5 → 0.1.6

Release version 0.1.5

Merge branch 'development' into main

Release version 0.1.4

Merge pull request #52 from MannLabs/development

Development

Release version 0.1.3

add missing pkg: lxml

Release version 0.1.2

release installer

Pre-trained models

Pre-trained MS2/RT/CCS models

Change log:

[2022-11-28] For timsTOF data, fragment intensities for training are no longer extracted from MaxQuant's msms.txt. We extracted fragments of AlphaPept PSMs against the ms_data.hdf, this should be more stable than msms.txt for timsTOF. The previous model is still available on https://datashare.biochem.mpg.de/s/RDSZlAnCRvxfLfk.

[2024-06-29] Add the pretrained LSTM-based HLA-I model (hla_model.zip) for peptide binding prediciton.