Data engineering profils et groupes de navires (#4158)

## Linked issues

- Resolve #358

Author: VincentAntoine

.gitignore

@@ -180,6 +180,10 @@ frontend/cypress/videos/
 /datascience/src/pipeline/data/non_commited_data/pno_segments_subscriptions.csv
 /datascience/src/pipeline/data/non_commited_data/pno_vessels_subscriptions.csv
 
+# Ignore downloaded external repositories
+datascience/tests/test_data/external/*
+!datascience/tests/test_data/external/README.md
+
 # Kotlin sessions
 .kotlin/
 

Makefile

@@ -1,5 +1,7 @@
 INFRA_FOLDER="$(shell pwd)/infra/configurations/"
 HOST_MIGRATIONS_FOLDER=$(shell pwd)/backend/src/main/resources/db/migration
+DATA_WAREHOUSE_INPUT_DATA_FOLDER=$(shell pwd)/datascience/tests/test_data/clickhouse_user_files
+EXTERNAL_DATA_FOLDER=$(shell pwd)/datascience/tests/test_data/external
 
 SHELL := /bin/bash
 .SHELLFLAGS = -ec
@@ -270,8 +272,8 @@ docker-compose-puppeteer-up: docker-env
 
 docker-build-pipeline:
 	docker build -f ./infra/docker/datapipeline/Dockerfile . -t monitorfish-pipeline:$(VERSION)
-docker-test-pipeline:
-	docker run --network host -v /var/run/docker.sock:/var/run/docker.sock -u monitorfish-pipeline:$(DOCKER_GROUP) --env-file datascience/.env.test --env HOST_MIGRATIONS_FOLDER=$(HOST_MIGRATIONS_FOLDER) monitorfish-pipeline:$(VERSION) coverage run -m pytest --pdb tests
+docker-test-pipeline: fetch-external-data run-data-warehouse
+	docker run --network host -v $(EXTERNAL_DATA_FOLDER):/home/monitorfish-pipeline/datascience/tests/test_data/external -v /var/run/docker.sock:/var/run/docker.sock -u monitorfish-pipeline:$(DOCKER_GROUP) --env-file datascience/.env.test --env HOST_MIGRATIONS_FOLDER=$(HOST_MIGRATIONS_FOLDER) monitorfish-pipeline:$(VERSION) coverage run -m pytest --pdb --ignore=tests/test_data/external tests
 docker-tag-pipeline:
 	docker tag monitorfish-pipeline:$(VERSION) docker.pkg.github.com/mtes-mct/monitorfish/monitorfish-pipeline:$(VERSION)
 docker-push-pipeline:
@@ -284,8 +286,29 @@ docker-push-pipeline:
 
 install-pipeline:
 	cd datascience && poetry install
+
+stop-data-warehouse:
+	export DATA_WAREHOUSE_PASSWORD=password && \
+	export DATA_WAREHOUSE_USER=clickhouse_user && \
+	export DATA_WAREHOUSE_INPUT_DATA_FOLDER=$(DATA_WAREHOUSE_INPUT_DATA_FOLDER) && \
+	docker compose -f ./datascience/tests/docker-compose.yml down -v
+
+fetch-external-data:
+	git clone --depth=1 --branch=main https://github.com/MTES-MCT/fisheries-and-environment-data-warehouse.git ./datascience/tests/test_data/external/data_warehouse || echo "Data Warehouse repository already present - skipping git clone"
+
+erase-external-data:
+	rm -rf datascience/tests/test_data/external/data_warehouse
+
+run-data-warehouse:
+	export DATA_WAREHOUSE_PASSWORD=password && \
+	export DATA_WAREHOUSE_USER=clickhouse_user && \
+	export DATA_WAREHOUSE_INPUT_DATA_FOLDER=$(DATA_WAREHOUSE_INPUT_DATA_FOLDER) && \
+	docker compose -f ./datascience/tests/docker-compose.yml up -d --remove-orphans
+
 test-pipeline:
-	cd datascience && export TEST_LOCAL=True && poetry run coverage run -m pytest --pdb tests/ && poetry run coverage report && poetry run coverage html
+	cd datascience && export TEST_LOCAL=True && poetry run coverage run -m pytest --pdb --ignore=tests/test_data/external tests/ && poetry run coverage report && poetry run coverage html
+
+test-pipeline-with-data_warehouse: fetch-external-data run-data-warehouse test-pipeline stop-data-warehouse
 
 # ----------------------------------------------------------
 # Remote: Database commands

backend/src/main/resources/db/migration/internal/V0.295__Create_vessel_profiles.sql

@@ -0,0 +1,16 @@
+-- Vessel profiles including the share (by weight) of catches made per gear, species, fao area, segment, landing_port...
+CREATE TABLE IF NOT EXISTS public.vessel_profiles (
+    cfr VARCHAR NOT NULL,
+    gears JSONB,
+    species JSONB,
+    fao_areas JSONB,
+    segments JSONB,
+    landing_ports JSONB,
+    recent_gears JSONB,
+    recent_species JSONB,
+    recent_fao_areas JSONB,
+    recent_segments JSONB,
+    recent_landing_ports JSONB,
+    latest_landing_port VARCHAR,
+    latest_landing_facade facade
+);

datascience/.env.template

@@ -33,6 +33,11 @@ MONITORFISH_LOCAL_NAME=
 MONITORFISH_LOCAL_USER=
 MONITORFISH_LOCAL_PWD=
 
+DATA_WAREHOUSE_HOST=
+DATA_WAREHOUSE_PORT=
+DATA_WAREHOUSE_USER=
+DATA_WAREHOUSE_PWD=
+
 # Proxies to use when accessing the Internet
 HTTP_PROXY_=
 HTTPS_PROXY_=

datascience/.env.test

@@ -26,6 +26,11 @@ MONITORFISH_LOCAL_NAME=db_name
 MONITORFISH_LOCAL_USER=db_user
 MONITORFISH_LOCAL_PWD=db_pwd
 
+DATA_WAREHOUSE_HOST=0.0.0.0
+DATA_WAREHOUSE_PORT=8123
+DATA_WAREHOUSE_USER=clickhouse_user
+DATA_WAREHOUSE_PWD=password
+
 # Proxy settings
 HTTPS_PROXY_=http://some.ip.address:port
 HTTP_PROXY_=http://some.ip.address:port