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Merge pull request #71 from MPI-Dortmund/add-link-2
add links to strategies
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docs/tutorials/tut01_reference.rst

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@@ -117,7 +117,7 @@ Below the table, you need to adjust the :guilabel:`metric min` and :guilabel:`si
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.. image:: ../img/tutorial_1/after_optim.png
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:width: 650
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In the left panel, select the references you would like to pick (ctrl click on windows, cmd click on mac to select multiple). You can now press :guilabel:`File` -> :guilabel:`Save selected Layer(s)`. In the dialog, change the :guilabel:`Files of type` to :guilabel:`Box Manager`. Choose filename like :guilabel:`selected_coords.tloc`. Make sure that the file ending is :file:`.tloc`.
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In the left panel, select the references you would like to pick (:kbd:`Control` + :kbd:`LMB` on linux/windows, :kbd:`CMD` + :kbd:`LMB` on mac to select multiple). You can now press :guilabel:`File` -> :guilabel:`Save selected Layer(s)`. In the dialog, change the :guilabel:`Files of type` to :guilabel:`Box Manager`. Choose filename like :guilabel:`selected_coords.tloc`. Make sure that the file ending is :file:`.tloc`.
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To convert the :file:`.tloc` file into :file:`.coords` you need to run
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You will find coordinate file for each reference in :file:`.coords` format in the :file:`coords/` folder.
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.. hint:: **Strategy: Improve your picks by refining your references**
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Manual selected references can sometimes be optimized using umaps!
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Check out the :ref:`corresponding strategy <strategy-01>`!
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8. Scale your coordinates
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^^^^^^^^^^^^^^^^^^^^^^^^^
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docs/tutorials/tut02_cluster.rst

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@@ -82,6 +82,8 @@ You can use the |mag| icon to change the displayed area/zoom and the :guilabel:`
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:width: 650
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:align: center
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6. Save target clusters
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^^^^^^^^^^^^^^^^^^^^^^^^
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.. image:: ../img/tutorial_1/after_optim.png
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:width: 650
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In the left panel, select the references you would like to pick (ctrl click on windows, cmd click on mac to select multiple). You can now press :guilabel:`File` -> :guilabel:`Save selected Layer(s)`. In the dialog, change the :guilabel:`Files of type` to :guilabel:`Box Manager`. Choose filename like :guilabel:`selected_coords.tloc`. Make sure that the file ending is :file:`.tloc`.
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In the left panel, select the references you would like to pick (:kbd:`Control` + :kbd:`LMB` on linux/windows, :kbd:`CMD` + :kbd:`LMB` on mac to select multiple). You can now press :guilabel:`File` -> :guilabel:`Save selected Layer(s)`. In the dialog, change the :guilabel:`Files of type` to :guilabel:`Box Manager`. Choose filename like :guilabel:`selected_coords.tloc`. Make sure that the file ending is :file:`.tloc`.
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.. hint:: **Strategy: Improve your picks by refining your cluster targets**
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Cluster targets can sometimes be optimized using umaps!
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Check out the :ref:`corresponding strategy <strategy-01>`!
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To convert the :file:`.tloc` file into :file:`.coords` you need to run
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