fix: correct variable name from 'input_metics' to 'input_metrics' in BAM_STATS_METRICS workflow

Author: Joon-Klaps

CHANGELOG.md

@@ -11,7 +11,6 @@ Initial release of Joon-Klaps/viralgenie, created with the [nf-core](https://nf-
 
 - Set default umitools dedup strategy to cluster ([#126](https://github.com/Joon-Klaps/viralgenie/pull/126))
 - Include both krakenreport &nodes.dmp in taxonomy filtering ([#128](https://github.com/Joon-Klaps/viralgenie/pull/128))
-- Include coverage plot & subset contig results in mqc report ([#129](https://github.com/Joon-Klaps/viralgenie/pull/129))
 - Add Sspace indiv to each assembler seperatly ([#132](https://github.com/Joon-Klaps/viralgenie/pull/132))
 - Add read & contig decomplexification using prinseq++  ([#133](https://github.com/Joon-Klaps/viralgenie/pull/133))
 - Add option to filter contig clusters based on cumulative read coverage ([#138](https://github.com/Joon-Klaps/viralgenie/pull/138))

subworkflows/local/bam_stats_metrics.nf

@@ -18,7 +18,7 @@ workflow BAM_STATS_METRICS {
     SAMTOOLS_INDEX ( sort_bam )
     ch_versions = ch_versions.mix(SAMTOOLS_INDEX.out.versions.first())
 
-    input_metics = sort_bam_ref
+    input_metrics = sort_bam_ref
         .join(SAMTOOLS_INDEX.out.bai, by: [0], remainder: true)
         .multiMap{
             meta, bam, ref, bai ->
@@ -27,15 +27,15 @@ workflow BAM_STATS_METRICS {
             bam_bai_bed: [meta, bam, bai, []]
         }
 
-    PICARD_COLLECTMULTIPLEMETRICS ( input_metics.bam_bai, input_metics.ref, [[:], []] )
+    PICARD_COLLECTMULTIPLEMETRICS ( input_metrics.bam_bai, input_metrics.ref, [[:], []] )
     ch_versions  = ch_versions.mix(PICARD_COLLECTMULTIPLEMETRICS.out.versions)
 
-    MOSDEPTH(input_metics.bam_bai_bed, input_metics.ref)
+    MOSDEPTH(input_metrics.bam_bai_bed, input_metrics.ref)
     ch_versions  = ch_versions.mix(MOSDEPTH.out.versions)
     ch_multiqc   = ch_multiqc.mix(MOSDEPTH.out.global_txt)
     ch_multiqc   = ch_multiqc.mix(MOSDEPTH.out.summary_txt)
 
-    BAM_STATS_SAMTOOLS ( input_metics.bam_bai, input_metics.ref )
+    BAM_STATS_SAMTOOLS ( input_metrics.bam_bai, input_metrics.ref )
     ch_versions  = ch_versions.mix(BAM_STATS_SAMTOOLS.out.versions)
     ch_multiqc   = ch_multiqc.mix(BAM_STATS_SAMTOOLS.out.stats)
     ch_multiqc   = ch_multiqc.mix(BAM_STATS_SAMTOOLS.out.flagstat)