missing_values_test.yaml

pattern_name: missing_values_test

classes:
  shape: PATO:shape
  anatomical_entity: UBERON:anatomical_entity
  thing: owl:Thing

relations:
  part_of: RO:part_of

annotationProperties:
  never_in_taxon: RO:never_in_taxon

vars:
  structure: anatomical_entity
  taxon: thing

list_vars:
  seeAlso: anatomical_entity

data_vars:
  term_name: xsd:string
  substitute_me: xsd:string

data_list_vars:
  exactSynonym: xsd:string
  relatedSynonyms: xsd:string
  broadSynonyms: xsd:string # don't put this column in the test input

annotations:
  - annotationProperty: never_in_taxon
    var: taxon

name:
  text: "%s"
  vars:
    - term_name

def:
  text: "%s %s %s"
  vars:
    - term_name
    - structure
    - substitute_me_munged

exact_synonym:
  value: exactSynonym

broad_synonym:
  value: broadSynonyms

substitutions:
  - in: substitute_me
    out: substitute_me_munged
    match: (.+) (.+)
    sub: \2 and then \1

equivalentTo:
  text: "%s and (part_of some %s)"
  vars:
    - structure
    - taxon