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fix(resources.smk): correct formatting
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Adds a missing space that was incorrectly naming the desired gtf file. Additionally, generalises the names for sues with multiple genomes.
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rbpatt2019 committed Dec 6, 2021
1 parent f9a75ef commit ae12c68
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions workflow/rules/resources.smk
Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,7 @@ rule get_gtf:
params:
url=config["get_gtf"]["url"],
output:
gtf="resources/mus_musculus.GRCm39.104.gtf",
gtf="resources/genome.gtf",
log:
"results/logs/get_gtf/get_gtf.log",
benchmark:
Expand All @@ -29,15 +29,15 @@ rule get_gtf:
"wget "
"--no-verbose -O- "
"{params.url} | "
"gunzip > {output.gtf}"
"gunzip > {output.gtf} "
"2> {log}"


rule get_fa:
params:
url=config["get_fa"]["url"],
output:
fa="resources/mus_musculus.GRCm39.dna.primary_assembly.fa",
fa="resources/genome.primary_assembly.fa",
log:
"results/logs/get_fa/get_fa.log",
benchmark:
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