Add new path variables to remaining run scripts.

Fixes ufs-community#772.

Author: GeorgeGayno-NOAA

util/gdas_init/copy_coldstart_files.sh

@@ -1,5 +1,8 @@
 #!/bin/bash
 
+# Copy files from the working directory to the
+# output directory.
+
 copy_data()
 {
 

util/gdas_init/run_pre-v14.chgres.sh

@@ -36,7 +36,7 @@ rm -fr $WORKDIR
 mkdir -p $WORKDIR
 cd $WORKDIR
 
-source $UFS_DIR/util/gdas_init/set_fixed_files.sh
+source $GDAS_INIT_DIR/set_fixed_files.sh
 
 cat << EOF > fort.41
 
@@ -61,14 +61,14 @@ cat << EOF > fort.41
 /
 EOF
 
-$APRUN $UFS_DIR/exec/chgres_cube
+$APRUN $EXEC_DIR/chgres_cube
 rc=$?
 
 if [ $rc != 0 ]; then
   exit $rc
 fi
 
-$UFS_DIR/util/gdas_init/copy_coldstart_files.sh $MEMBER $OUTDIR $yy $mm $dd $hh $INPUT_DATA_DIR
+$GDAS_INIT_DIR/copy_coldstart_files.sh $MEMBER $OUTDIR $yy $mm $dd $hh $INPUT_DATA_DIR
 
 rm -fr $WORKDIR
 

util/gdas_init/run_v14.chgres.sh

@@ -32,7 +32,7 @@ rm -fr $WORKDIR
 mkdir -p $WORKDIR
 cd $WORKDIR
 
-source $UFS_DIR/util/gdas_init/set_fixed_files.sh
+source $GDAS_INIT_DIR/set_fixed_files.sh
 
 cat << EOF > fort.41
 
@@ -58,14 +58,14 @@ cat << EOF > fort.41
 /
 EOF
 
-$APRUN $UFS_DIR/exec/chgres_cube
+$APRUN $EXEC_DIR/chgres_cube
 rc=$?
 
 if [ $rc != 0 ]; then
   exit $rc
 fi
 
-$UFS_DIR/util/gdas_init/copy_coldstart_files.sh $MEMBER $OUTDIR $yy $mm $dd $hh $INPUT_DATA_DIR
+$GDAS_INIT_DIR/copy_coldstart_files.sh $MEMBER $OUTDIR $yy $mm $dd $hh $INPUT_DATA_DIR
 
 rm -fr $WORKDIR
 

util/gdas_init/run_v16.chgres.sh

@@ -46,7 +46,7 @@ rm -fr $WORKDIR
 mkdir -p $WORKDIR
 cd $WORKDIR
 
-source $UFS_DIR/util/gdas_init/set_fixed_files.sh
+source $GDAS_INIT_DIR/set_fixed_files.sh
 
 cat << EOF > fort.41
 
@@ -71,14 +71,14 @@ cat << EOF > fort.41
 /
 EOF
 
-$APRUN $UFS_DIR/exec/chgres_cube
+$APRUN $EXEC_DIR/chgres_cube
 rc=$?
 
 if [ $rc != 0 ]; then
   exit $rc
 fi
 
-$UFS_DIR/util/gdas_init/copy_coldstart_files.sh $MEMBER $OUTDIR $yy $mm $dd $hh $INPUT_DATA_DIR
+$GDAS_INIT_DIR/copy_coldstart_files.sh $MEMBER $OUTDIR $yy $mm $dd $hh $INPUT_DATA_DIR
 
 rm -fr $WORKDIR