coverage.yml

name: '[test] coverage'

on: 
  pull_request:
    branches:
    - main

concurrency:
  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
  cancel-in-progress: true

jobs:
  coverage:
    runs-on: ubuntu-20.04  # use ubuntu-latest when python 3.7 is dropped

    steps:
    - uses: actions/checkout@v4
    - name: Set up Python 3.7
      uses: actions/setup-python@v4
      with:
        python-version: 3.7

    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        python -m pip install -U .
        pip install -r requirements-test.txt
        if [ -f requirements.txt ]; then pip install -r requirements.txt; fi

    - name: Generate coverage
      run: |
        pytest --cov=siibra --cov-report=xml

    - name: Upload coverage report to codecov
      uses: codecov/codecov-action@v4
      with:
        fail_ci_if_error: true # optional (default = false)
        verbose: true # optional (default = false)
        token: ${{ secrets.CODECOV_TOKEN }}