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@epiverse-trace

Epiverse-TRACE

README.md

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  1. sivirep sivirep Public

    Data Wrangling and Automated Reports from 'SIVIGILA' source

    R 42 4

  2. epiparameter epiparameter Public

    R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parameters for infectious diseases

    R 34 12

  3. serofoi serofoi Public

    Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

    R 19 4

  4. vaccineff vaccineff Public

    R package with tools for estimating vaccine effectiveness and vaccine related metrics

    R 16 4

  5. cfr cfr Public

    R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series

    R 14 4

  6. epiCo epiCo Public

    R package for statistical and spatiotemporal modeling of epidemiological data for vector-borne diseases in Colombia

    R 11 2

Repositories

Showing 10 of 61 repositories
  • epidemics Public

    A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.

    epiverse-trace/epidemics’s past year of commit activity
    R 8 4 20 (1 issue needs help) 5 Updated Apr 8, 2025
  • etdev Public

    Internal package providing tools for Epiverse-TRACE developers

    epiverse-trace/etdev’s past year of commit activity
    R 1 0 5 2 Updated Apr 8, 2025
  • etstats Public
    epiverse-trace/etstats’s past year of commit activity
    R 1 CC0-1.0 0 0 0 Updated Apr 8, 2025
  • cfr Public

    R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series

    epiverse-trace/cfr’s past year of commit activity
    R 14 4 12 4 Updated Apr 8, 2025
  • etdashboard Public

    Developer dashboard for a universe overview of Epiverse-TRACE packages

    epiverse-trace/etdashboard’s past year of commit activity
    R 1 0 0 0 Updated Apr 8, 2025
  • epitkit Public
    epiverse-trace/epitkit’s past year of commit activity
    R 0 2 7 1 Updated Apr 8, 2025
  • epimodelac Public

    Training materials for the epimodelac workshop

    epiverse-trace/epimodelac’s past year of commit activity
    R 8 4 11 2 Updated Apr 8, 2025
  • tutorials-middle Public

    Tutorials to learn real-time analysis that includes accessing epidemiological delays, estimating transmission metrics, forecasting, and severity from aggregated incidence data, superspreading from line list and contact data, and simulating transmission chains.

    epiverse-trace/tutorials-middle’s past year of commit activity
    R 3 2 67 (2 issues need help) 5 Updated Apr 8, 2025
  • research-compendium Public
    epiverse-trace/research-compendium’s past year of commit activity
    R 1 0 19 1 Updated Apr 8, 2025
  • tutorials-late Public

    Tutorials to learn accessing and analyzing social contact matrices, scenario modelling to simulate disease spread and investigate interventions, and modelling disease burden.

    epiverse-trace/tutorials-late’s past year of commit activity
    R 2 1 35 1 Updated Apr 8, 2025
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