sparql_metadata.json

[
    {
        "id": "DQ1",
        "targets": [
            "doid.owl"
        ],
        "description": "All diseases with their parents (identified by label)",
        "query": "sparql/dq1-disease_parents.rq"
    },
    {
        "id": "DQ2",
        "targets": [
            "doid.owl"
        ],
        "description": "Count of diseases in each branch (diseases may be in multiple branches)",
        "query": "sparql/dq2-branch_count.rq"
    },
    {
        "id": "DQ3",
        "targets": [
            "doid.owl"
        ],
        "description": "Syndromes (branch search; returns IRI, ID and label)",
        "query": "sparql/dq3-syndromes.rq"
    },
    {
        "id": "DQ4",
        "targets": [
            "doid.owl"
        ],
        "description": "Sarcoma diseases with parents, identified as descendants of sarcoma (DOID:1115) or with 'sarcoma' in their label",
        "query": "sparql/dq4-sarcoma.rq"
    },
    {
        "id": "DQ5",
        "targets": [
            "doid.owl"
        ],
        "description": "Diseases with MeSH cross-references",
        "query": "sparql/dq5-do_xref_mesh.rq"
    },
    {
        "id": "DQ6",
        "targets": [
            "doid.owl"
        ],
        "description": "Diseases with OMIM cross-references",
        "query": "sparql/dq6-do_xref_omim.rq"
    },
    {
        "id": "DQ7",
        "targets": [
            "doid.owl"
        ],
        "description": "Complete mapping from MeSH disease to ICD10CM codes, using DO disease cross-references",
        "query": "sparql/dq7-mesh_icd10cm.rq"
    },
    {
        "id": "DQ8",
        "targets": [
            "doid.owl"
        ],
        "description": "Diseases with PubMed sources (limited to first 10 results)",
        "query": "sparql/dq8-disease_pubmed.rq"
    },
    {
        "id": "DQ9",
        "targets": [
            "doid.owl"
        ],
        "description": "Diseases in DO_infectious_disease_slim with their parents and branches",
        "query": "sparql/dq9-DO_infectious_disease_slim.rq"
    },
    {
        "id": "DQ10",
        "targets": [
            "doid.owl"
        ],
        "description": "Diseases with their definitions and count of logical axioms",
        "query": "sparql/dq10-def_logical_count.rq"
    },
    {
        "id": "MQ1",
        "targets": [
            "doid-merged.owl"
        ],
        "description": "Diseases with their Evidence and Conclusion Ontology (ECO) reference types (queries the doid-merged.owl graph)",
        "query": "sparql/mq1-disease_evidence.rq"
    },
    {
        "id": "MQ2",
        "targets": [
            "doid-merged.owl"
        ],
        "description": "Count of classes imported from other ontologies (queries the doid-merged.owl graph)",
        "query": "sparql/mq2-imported.rq"
    },
    {
        "id": "MQ3",
        "targets": [
            "doid-merged.owl"
        ],
        "description": "All diseases with equivalent class axioms (axioms are formatted for readability and may not be displayed in full; queries the doid-merged.owl graph)",
        "query": "sparql/mq3-disease_eqclass.rq"
    },
    {
        "id": "CQ1",
        "targets": [
            "doid-merged.owl"
        ],
        "description": "Extract the disease and supporting import class hierarchies using subClassOf relationships (executes a CONSTRUCT query that returns RDF triples)",
        "query": "sparql/cq1-disease_import_hierarchies.rq"
    },
    {
        "id": "FQ1",
        "targets": [
            "doid.owl",
            "protein ontology"
        ],
        "description": "Federated query (DO-PRO): Retrieve proteoforms associated with progression of cancer",
        "query": "sparql/fq1-do_pro.rq"
    },
    {
        "id": "Prefixes",
        "targets": null,
        "description": "Common prefixes (not a full query)",
        "query": "sparql/prefixes.rq"
    }
]