wa_auspice_config_hmpxv1.json

{
  "title": "Genomic epidemiology of monkeypox virus - Washington state focused build",
  "maintainers": [
    {"name": "Steph Lunn, MPH, MS", "url": "https://github.com/DOH-SML1303/wa_mpxv"}
  ],
  "data_provenance": [
    {
      "name": "GenBank",
      "url": "https://www.ncbi.nlm.nih.gov/genbank/"
    }
  ],
  "build_url": "https://github.com/nextstrain/monkeypox",
  "colorings": [
    {
      "key": "age",
      "title": "Patient Age",
      "type": "categorical"
    },
    {
      "key": "sex",
      "title": "Patient Sex",
      "type": "categorical"
    },
    {
      "key": "travel",
      "title": "Travel (Past 3 Weeks)",
      "type": "categorical"
    },
    {
      "key": "county",
      "title": "County",
      "type": "categorical"
    },
    {
      "key": "location",
      "title": "Location",
      "type": "categorical"
    },
    {
      "key": "division",
      "title": "Division",
      "type": "categorical"
    },
    {
      "key": "region",
      "title": "Region",
      "type": "categorical"
    },
    {
      "key": "country",
      "title": "Country",
      "type": "categorical"
    },
    {
      "key": "host",
      "title": "Host",
      "type": "categorical"
    },
    {
      "key": "GA_CT_fraction",
      "title": "G→A or C→T fraction",
      "type": "continuous"
    },
    {
      "key": "dinuc_context_fraction",
      "title": "NGA/TCN context of G→A/C→T mutations",
      "type": "continuous"
    },
    {
      "key": "recency",
      "title": "Submission Recency",
      "type": "categorical"
    },
    {
      "key": "date_submitted",
      "title": "Submission Date",
      "type": "categorical"
    }
  ],
  "geo_resolutions": [
    "country"
  ],
  "display_defaults": {
    "color_by": "clade_membership",
    "map_triplicate": true,
    "distance_measure": "num_date",
    "transmission_lines": false
  },
  "filters": [
    "clade_membership",
    "country",
    "region",
    "recency",
    "host",
    "division",
    "location",
    "county"
  ]
}