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johnpapad24johnpapad24
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The script files that the initial commit ignored for some reason
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‎util/build-third-party/build-gcc_new.sh

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#!/bin/bash
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# -----------------------------------------------------------------------------
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#
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# Copyright (C) 2021 CERN & University of Surrey for the benefit of the
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# BioDynaMo collaboration. All Rights Reserved.
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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#
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# See the LICENSE file distributed with this work for details.
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# See the NOTICE file distributed with this work for additional information
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# regarding copyright ownership.
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#
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# -----------------------------------------------------------------------------
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if [[ $# -ne 1 ]]; then
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echo "ERROR: Wrong number of arguments.
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Description:
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This script builds GCC.
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The archive will be stored in BDM_PROJECT_DIR/build/gcc.tar.gz
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Arguments:
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\$1 BDM_PROJECT_DIR" 1>&2;
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exit 2
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fi
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GCC_VERSION_TXZ=gcc-11.5.0
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BDM_PROJECT_DIR=$1
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# import util functions
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. $BDM_PROJECT_DIR/util/installation/common/util.sh
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GCC_INSTALL_DIR=$BDM_PROJECT_DIR/third_party/gcc
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GCC_TXZ_FILE=$BDM_PROJECT_DIR/third_party/$GCC_VERSION_TXZ.tar.xz
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build_gcc(){
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DEST_DIR=$BDM_PROJECT_DIR/build/build-third-party/build_gcc
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rm -rf $DEST_DIR
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rm -rf $GCC_INSTALL_DIR
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mkdir -p $DEST_DIR
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mkdir -p $GCC_INSTALL_DIR
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tar -Jxvf $GCC_TXZ_FILE -C $DEST_DIR --strip-components=1
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cd $DEST_DIR
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./configure --disable-multilib --prefix="$GCC_INSTALL_DIR"
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make -j$(CPUCount)
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make install
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return
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}
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SPECIFIC_BDM_OS=$(DetectOs)
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DEFAULT_GCCBD_OPTION="Yes"
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if echo "$SPECIFIC_OSES_SUPPORTED" | grep -Eiq "$SPECIFIC_BDM_OS" ; then
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DEFAULT_GCCBD_OPTION="No"
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fi
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while true; do
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read -p "Do you want to build GCC or use your platform's default version? (Y(Yes/build) / N(No/default))
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Default option for your platform: ($DEFAULT_GCCBD_OPTION): " GCCBD_ANS
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case $GCCBD_ANS in
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[yY] ) echo "Building GCC:" 1>&2;
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build_gcc
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exit 0;;
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[nN] ) echo "Using default GCC" 1>&2;
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exit 0;;
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"" ) echo "Initiating default option ($DEFAULT_GCCBD_OPTION): " 1>&2;
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if [ "$DEFAULT_GCCBD_OPTION" == "Yes" ]; then
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echo "Building GCC" 1>&2;
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build_gcc
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exit 0
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elif [ "$DEFAULT_GCCBD_OPTION" == "No" ]; then
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echo "Using default GCC:" 1>&2;
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exit 0
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fi ;;
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* ) echo "Please answer yes (Y/y) or no (N/n) " 1>&2;;
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esac
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done

‎util/build-third-party/build-nest_new.sh

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#!/bin/bash
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# -----------------------------------------------------------------------------
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#
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# Copyright (C) 2021 CERN & University of Surrey for the benefit of the
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# BioDynaMo collaboration. All Rights Reserved.
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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#
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# See the LICENSE file distributed with this work for details.
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# See the NOTICE file distributed with this work for additional information
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# regarding copyright ownership.
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#
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# -----------------------------------------------------------------------------
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if [[ $# -ne 1 ]]; then
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echo "ERROR: Wrong number of arguments.
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Description:
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This script builds NEST.
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The archive will be stored in BDM_PROJECT_DIR/build/.tar.gz
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Arguments:
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\$1 BDM_PROJECT_DIR" 1>&2;
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exit 2
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fi
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NEST_VERSION_TGZ=nest-simulator-3.8
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PYV2=`echo $PYVERS | cut -d . -f 1-2`
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BDM_PROJECT_DIR=$1
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# import util functions
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. $BDM_PROJECT_DIR/util/installation/common/util.sh
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NEST_INSTALL_DIR=$BDM_PROJECT_DIR/third_party/nest
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NEST_TGZ_FILE=$BDM_PROJECT_DIR/third_party/$NEST_VERSION_TGZ.tar.gz
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build_NEST(){
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BDM_OS=$(DetectOs2)
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PYTH=""
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FEATURES=""
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if [ $BDM_OS == "osx" ]; then
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if [ $brewpy == "yes" ]; then
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PYTH="$(brew --prefix)/bin/python${PYV2}"
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else
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export PYENV_NEST=$(brew --prefix)/opt/.pyenv
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eval "$(pyenv init -)"
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pyenv shell $PYVERS
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PYTH="`pyenv which python`"
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fi
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else
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PYTH="`pyenv which python`"
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fi
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DEST_DIR=$BDM_PROJECT_DIR/build/build-third-party/build_nest
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rm -rf $DEST_DIR
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rm -rf $NEST_INSTALL_DIR
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mkdir -p $DEST_DIR
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mkdir -p $NEST_INSTALL_DIR
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if ! [ -e $NEST_TGZ_FILE ]; then
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curl -o $NEST_TGZ_FILE https://github.com/nest/nest-simulator/archive/refs/tags/v3.8.tar.gz
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fi
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tar -xvzf $NEST_TGZ_FILE -C $DEST_DIR --strip-components=1
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cd $DEST_DIR
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mkdir obj
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cd obj
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echo $PYTH
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cmake -DCMAKE_INSTALL_PREFIX=$NEST_INSTALL_DIR ..
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cmake --build . --parallel $(CPUCount) --target install
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return
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}
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build_NEST
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exit 0;
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done

‎util/build-third-party/build-paraview_new.sh

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#!/bin/bash
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# -----------------------------------------------------------------------------
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#
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# Copyright (C) 2021 CERN & University of Surrey for the benefit of the
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# BioDynaMo collaboration. All Rights Reserved.
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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#
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# See the LICENSE file distributed with this work for details.
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# See the NOTICE file distributed with this work for additional information
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# regarding copyright ownership.
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#
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# -----------------------------------------------------------------------------
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if [[ $# -ne 1 ]]; then
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echo "ERROR: Wrong number of arguments.
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Description:
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This script builds ParaView.
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The archive will be stored in BDM_PROJECT_DIR/build/PARAVIEW.tar.gz
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Arguments:
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\$1 BDM_PROJECT_DIR" 1>&2;
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exit 2
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fi
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PARAVIEW_VERSION_TXZ=ParaView-v5.9.0
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CATALYST_VERSTON_TGZ=catalyst-for-paraview-5.9
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BDM_PROJECT_DIR=$1
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# import util functions
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. $BDM_PROJECT_DIR/util/installation/common/util.sh
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PARAVIEW_INSTALL_DIR=$BDM_PROJECT_DIR/third_party/paraview
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CATALYST_TGZ_FILE=$BDM_PROJECT_DIR/third_party/$CATALYST_VERSTON_TGZ.tar.gz
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PARAVIEW_TXZ_FILE=$BDM_PROJECT_DIR/third_party/$PARAVIEW_VERSION_TXZ.tar.xz
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build_paraview(){
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FEATURES=""
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PYTH=""
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BDM_OS=$(DetectOs2)
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if [ $BDM_OS = "osx" ]; then
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if [ $brewpy == "yes" ]; then
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PYTH="$(brew --prefix)/bin/python${PYV2}"
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else
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export PYENV_ROOT=$(brew --prefix)/opt/.pyenv
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eval "$(pyenv init -)"
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pyenv shell $PYVERS
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PYTH="`pyenv which python`"
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fi
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else
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PYTH="`pyenv which python`"
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fi
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DEST_DIR=$BDM_PROJECT_DIR/build/build-third-party/build_paraview
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rm -rf $DEST_DIR
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rm -rf $PARAVIEW_INSTALL_DIR
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mkdir -p $DEST_DIR
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mkdir -p $DEST_DIR/catalyst
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mkdir -p $PARAVIEW_INSTALL_DIR
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mkdir -p $PARAVIEW_INSTALL_DIR/catalyst
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tar -xvzf $CATALYST_TGZ_FILE -C $DEST_DIR/catalyst --strip-components=1
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tar -Jxvf $PARAVIEW_TXZ_FILE -C $DEST_DIR --strip-components=1
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export Qt5_DIR=$BDM_PROJECT_DIR/build/third_party/qt
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cd $DEST_DIR/catalyst
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mkdir obj
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cd obj
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cmake -DCMAKE_INSTALL_PREFIX=$PARAVIEW_INSTALL_DIR/catalyst ..
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make -j$(CPUCount)
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make install
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cd $DEST_DIR
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mkdir obj
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cd obj
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export catalyst_DIR=$PARAVIEW_INSTALL_DIR/catalyst
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cmake -DENABLE_ospray:BOOL=ON -DENABLE_ospraymaterials:BOOL=ON -DENABLE_paraviewsdk:BOOL=ON -DPARAVIEW_USE_PYTHON=YES -DPARAVIEW_USE_CATALYST=YES -DPARAVIEW_ENABLE_CATALYST=YES -DPARAVIEW_ENABLE_NONESSENTIAL=YES -DPARAVIEW_USE_MPI=ON -DVTK_MODULE_ENABLE_ParaView_Catalyst=YES -DVTK_MODULE_ENABLE_ParaView_PythonCatalyst=YES -DPYTHON_EXECUTABLE="$PYTH" -DCMAKE_INSTALL_PREFIX=$PARAVIEW_INSTALL_DIR ..
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make -j$(CPUCount)
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make install
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return
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}
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SPECIFIC_BDM_OS=$(DetectOs)
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DEFAULT_PARAVIEWBD_OPTION="Yes"
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if echo "$SPECIFIC_OSES_SUPPORTED" | grep -Eiq "$SPECIFIC_BDM_OS" ; then
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DEFAULT_PARAVIEWBD_OPTION="No"
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fi
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while true; do
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read -p "Do you want to build, download or offer provided ParaView? (Y(Yes/build) / N(No/download))
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Default option for your platform: ($DEFAULT_PARAVIEWBD_OPTION): " PARAVIEWBD_ANS
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case $PARAVIEWBD_ANS in
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[yY] ) echo "Building ParaView:" 1>&2;
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build_paraview
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exit 0;;
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[nN] ) echo "Downloading ParaView:" 1>&2;
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exit 1;;
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#[pP] ) echo "Extracting Provided ParaView:" 1>&2;
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# exit 3 ;;
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"" ) echo "Initiating default option ($DEFAULT_PARAVIEWBD_OPTION): " 1>&2;
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if [ "$DEFAULT_PARAVIEWBD_OPTION" == "Yes" ]; then
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echo "Building ParaView:" 1>&2;
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build_paraview
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exit 0
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elif [ "$DEFAULT_PARAVIEWBD_OPTION" == "No" ]; then
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echo "Downloading ParaView:" 1>&2;
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exit 1
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elif [ "$DEFAULT_PARAVIEWBD_OPTION" == "Prov" ]; then
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echo "Extracting Provided ParaView:" 1>&2;
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exit 3
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fi ;;
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* ) echo "Please answer yes (Y/y) or no (N/n) " 1>&2;;
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esac
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done

‎util/build-third-party/build-qt_new.sh

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#!/bin/bash
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# -----------------------------------------------------------------------------
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#
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# Copyright (C) 2021 CERN & University of Surrey for the benefit of the
5+
# BioDynaMo collaboration. All Rights Reserved.
6+
#
7+
# Licensed under the Apache License, Version 2.0 (the "License");
8+
# you may not use this file except in compliance with the License.
9+
#
10+
# See the LICENSE file distributed with this work for details.
11+
# See the NOTICE file distributed with this work for additional information
12+
# regarding copyright ownership.
13+
#
14+
# -----------------------------------------------------------------------------
15+
16+
if [[ $# -ne 1 ]]; then
17+
echo "ERROR: Wrong number of arguments.
18+
Description:
19+
This script builds QT.
20+
The archive will be stored in BDM_PROJECT_DIR/build/QT.tar.gz
21+
Arguments:
22+
\$1 BDM_PROJECT_DIR" 1>&2;
23+
exit 2
24+
fi
25+
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QT_VERSION_TXZ=qtbase-everywhere-opensource-src-5.15.16
27+
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BDM_PROJECT_DIR=$1
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# import util functions
32+
. $BDM_PROJECT_DIR/util/installation/common/util.sh
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34+
QT_INSTALL_DIR=$BDM_PROJECT_DIR/third_party/qt
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QT_TXZ_FILE=$BDM_PROJECT_DIR/third_party/$QT_VERSION_TXZ.tar.xz
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declare -a QT_MODULE_TXZ=("qtsvg-everywhere-opensource-src-5.15.16" "qtxmlpatterns-everywhere-opensource-src-5.15.16" "qttools-everywhere-opensource-src-5.15.16" "qtwayland-everywhere-opensource-src-5.15.16" "qtmultimedia-everywhere-opensource-src-5.15.16" "qtmqtt-everywhere-opensource-src-5.15.16" "qtknx-everywhere-opensource-src-5.15.16" "qtimageformats-everywhere-opensource-src-5.15.16")
38+
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build_qt(){
40+
BDM_OS=$(DetectOs2)
41+
42+
DEST_DIR=$BDM_PROJECT_DIR/build/build-third-party/build_qt
43+
rm -rf $DEST_DIR
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rm -rf $QT_INSTALL_DIR
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mkdir -p $DEST_DIR
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tar -Jxvf $QT_TXZ_FILE -C $DEST_DIR --strip-components=1
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cd $DEST_DIR
48+
sed -i 's@/usr/local/Qt-$\$\[QT_VERSION]@/usr/local/Qt@g' configure.pri
49+
sed -i "s@/usr/local/Qt@$QT_INSTALL_DIR@g" configure.pri
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./configure -xcb -xcb-xlib -bundled-xcb-xinput -opensource -confirm-license
51+
make -j$(CPUCount)
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make install
53+
QMAKE_BIN=$QT_INSTALL_DIR/bin/qmake
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arraylength=${#QT_MODULE_TXZ[@]}
55+
for((i=0; i<${arraylength}; i++));
56+
do
57+
mkdir $BDM_PROJECT_DIR/build/build-third-party/build_qt_module_$i
58+
tar -Jxvf $BDM_PROJECT_DIR/third_party/qtmodules/${QT_MODULE_TXZ[$i]}.tar.xz -C $BDM_PROJECT_DIR/build/build-third-party/build_qt_module_$i --strip-components=1
59+
cd $BDM_PROJECT_DIR/build/build-third-party/build_qt_module_$i
60+
$QMAKE_BIN .
61+
make -j$(CPUCount)
62+
make install
63+
done
64+
return
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}
66+
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SPECIFIC_BDM_OS=$(DetectOs)
68+
69+
DEFAULT_QTBD_OPTION="Yes"
70+
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if echo "$SPECIFIC_OSES_SUPPORTED" | grep -Eiq "$SPECIFIC_BDM_OS" ; then
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DEFAULT_ROOTBD_OPTION="No"
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fi
74+
75+
while true; do
76+
read -p "Do you want to build or download QT? (Y(Yes/build) / N(No/download))
77+
Default option for your platform: ($DEFAULT_QTBD_OPTION): " QTBD_ANS
78+
79+
case $QTBD_ANS in
80+
[yY] ) echo "Building QT:" 1>&2;
81+
build_qt
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exit 0;;
83+
[nN] ) echo "Downloading QT:" 1>&2;
84+
exit 1;;
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"" ) echo "Initiating default option ($DEFAULT_QTBD_OPTION): " 1>&2;
86+
if [ "$DEFAULT_QTBD_OPTION" == "Yes" ]; then
87+
echo "Building QT:" 1>&2;
88+
build_qt
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exit 0
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elif [ "$DEFAULT_QTBD_OPTION" == "No" ]; then
91+
echo "Downloading QT:" 1>&2;
92+
exit 1
93+
fi ;;
94+
* ) echo "Please answer yes (Y/y) or no (N/n) " 1>&2;;
95+
esac
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done

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