This is major/minor release of the AusTraits database.
- austraits-4.1.0.zip: contains the compiled dataset and detailed of structure
- austraits-4.1.0.rds: contains a version of the dataset for direct loading in R
- source code v4.1.0.zip: contains the source materials used to build the compiled dataset
For details on access, structure and usage please visit https://doi.org/10.5281/zenodo.3568417
This release was generated from source materials available at https://github.com/traitecoevo/austraits.build/releases/tag/v4.1.0 A full set of changes in the source can be viewed at: https://github.com/traitecoevo/austraits.build/compare/v4.0.0…v4.1.0
Compared to the last version, this release contains substantial additions of new data and improvement of old data.
| version | dataset_id | taxa | locations | traits | records |
|---|---|---|---|---|---|
| 4.0.0 | 296 | 34028 | 2697 | 470 | 1257443 |
| 4.1.0 | 296 | 34017 | 2697 | 464 | 1253250 |
This release contains:
- Align units with UCUM standards
- Correct small mistakes in plant woodiness and life history in datasets extracted from national and state floras (ABS_2022; WAH_2022_1; WAH_2022_2; NHNSW_2022; RBGV_2022; SAH_2022; NTH_2022)
- Remove a small number of duplicate taxa from taxon.csv
- Fix mistake in process.R script that was duplicating methods for some dataset by trait combinations
- Further standardise trait names
This is major/minor release of the AusTraits database.
- austraits-4.0.0.zip: contains the compiled dataset and detailed of structure
- austraits-4.0.0.rds: contains a version of the dataset for direct loading in R
- source code v4.0.0.zip: contains the source materials used to build the compiled dataset
For details on access, structure and usage please visit https://doi.org/10.5281/zenodo.3568417
This release was generated from source materials available at https://github.com/traitecoevo/austraits.build/releases/tag/v4.0.0.
A full set of changes in the source can be viewed at: https://github.com/traitecoevo/austraits.build/compare/v3.0.2…v4.0.0
Compared to the last version, this release contains substantial additions of new data and improvement of old data.
| version | dataset_id | taxa | locations | traits | records |
|---|---|---|---|---|---|
| 3.0.2 | 283 | 28640 | 4721 | 448 | 997808 |
| 4.0.0 | 296 | 34028 | 2697 | 470 | 1257443 |
Changes for this release include:
- Established code as a standalone package
- Align variables (column names) with Darwin Core, Dublin Core, and the Ecological Trait-data Standard
- Allowing more metadata to be associated with individual trait measurements instead of traits or the dataset (e.g. life stage, replicates, entity type)
- Rework context, so that multiple context properties can be read in
- Reworked identifiers, including 5 separate context property identifiers and location id
- Add source_id, such that individual rows of data can be attributed to a specific source
- Merge different date fields into
collection_date - Work from two separate vocabulary workshops merged in (
Seed Traits&Whole Plant and Leaf Vegetative Traits). Also some work realigning traits related to fire response. - Rename other traits to have more consistent naming
- Added entity_type, reflecting the entity being measured
- Added scraped data from online floras for 7 traits related to plant growth form. For
plant_growth_formandwoodinessmanually gap-filled from the taxonomic literature to have complete data coverage - Reworked how taxonomic names are processed, such that submitted taxon names are now aligning to the most specific taxon name possible, with separate columns for
family;genus;binomial;trinomial, filled in as appropriate. - New taxonomic updates added, based on updated algorithms that do a much better job of capturing phrase names and submitted taxon names that include notes. In addition, algorithms automatically identify names that can only be aligned to genus.
- Removed taxon matching code from austraits.build (to become part of a separate package)
- Add database metadata into the build process
This release contains:
- 14 new sources added to the dataset: ABRS_2022, ATRP_2020, Campbell_2006, Clarke_2009, NHNSW_2022, Nolan_2022, NTH_2022, RBGV_2022, SAH_2022, WAH_2022_1, WAH_2022_2, Wenk_2022, Williams_2012
- 12 new contributors: Alastair Robinson, Andre Messina, Daniel Ohlsen, David Coleman, Elizabeth Wenk, Matthias M. Boer, Monica Campbell, Neville Walsh, Niels Klazenga, Paul R. Williams, Rachael Nolan, Val Stajsic
- 3 sources renamed : Barlow_1981 -> ABRS_1981, RBGSYD_2014 -> NHNSW_2014, RBGSYD_2014_2 -> NHNSW_2014_2
Details on new studies:
| dataset_id | taxa | locations | traits | records |
|---|---|---|---|---|
| ABRS_2022 | 13988 | 1 | 7 | 48353 |
| ATRP_2020 | 1490 | 1 | 8 | 1831 |
| Campbell_2006 | 65 | 3 | 6 | 390 |
| Clarke_2009 | 469 | 6 | 7 | 1824 |
| NHNSW_2022 | 7913 | 1 | 7 | 28354 |
| Nolan_2022 | 18 | 8 | 10 | 606 |
| NTH_2022 | 2451 | 1 | 7 | 8183 |
| RBGV_2022 | 5368 | 1 | 7 | 19060 |
| SAH_2022 | 3499 | 1 | 7 | 11905 |
| WAH_2022_1 | 683 | 1 | 7 | 2254 |
| WAH_2022_2 | 13331 | 1 | 7 | 48703 |
| Wenk_2022 | 30280 | 1 | 2 | 60309 |
| Williams_2012 | 79 | 1 | 6 | 206 |
Full Changelog: https://github.com/traitecoevo/austraits.build/compare/v3.0.2...v4.0.0
This is minor release of the AusTraits database.
- austraits-3.0.2.zip: contains the compiled dataset and detailed of structure
- austraits-3.0.2.rds: contains a version of the dataset for direct loading in R
- source code v3.0.2.zip: contains the source materials used to build the compiled dataset
For details on access, structure and usage please visit https://doi.org/10.5281/zenodo.3568417
This release was generated from source materials available at https://github.com/traitecoevo/austraits.build/releases/tag/v3.0.2 A full set of changes in the source can be viewed at: https://github.com/traitecoevo/austraits.build/compare/v3.0.1...v3.0.2
Compared to the last version, this release contains corrections on citations.
| version | dataset_id | taxa | sites | traits | records |
|---|---|---|---|---|---|
| 3.0.1 | 283 | 28640 | 4721 | 448 | 997808 |
| 3.0.2 | 283 | 28640 | 4721 | 448 | 997808 |
This release contains:
- 0 new sources added to the dataset
- 0 new contributors
- 0 sources removed
- 0 new or updated records for 0 existing traits
- 0 new records for 0 new traits
This is minor release of the AusTraits database.
- austraits-3.0.1.zip: contains the compiled dataset and detailed of structure
- austraits-3.0.1.rds: contains a version of the dataset for direct loading in R
- source code v3.0.1.zip: contains the source materials used to build the compiled dataset
For details on access, structure and usage please visit https://doi.org/10.5281/zenodo.3568417
This release was generated from source materials available at https://github.com/traitecoevo/austraits.build/releases/tag/v3.0.1 A full set of changes in the source can be viewed at: https://github.com/traitecoevo/austraits.build/compare/v3.0.0…v3.0.1
Compared to the last version, this release contains substantial additions of new data and improvement of old data.
| version | dataset_id | taxa | sites | traits | records |
|---|---|---|---|---|---|
| 3.0.0 | 283 | 28639 | 4721 | 446 | 997808 |
| 3.0.1 | 283 | 28640 | 4721 | 448 | 997808 |
This release contains:
- fixes to leaf areas in previous version in Everingham_2020
- updates on definitions
This is major release of the AusTraits database.
- austraits-3.0.0.zip: contains the compiled dataset and detailed of structure
- austraits-3.0.0.rds: contains a version of the dataset for direct loading in R
- source code v3.0.0.zip: contains the source materials used to build the compiled dataset
For details on access, structure and usage please visit https://doi.org/10.5281/zenodo.3568417
This release was generated from source materials available at https://github.com/traitecoevo/austraits.build/releases/tag/v3.0.0 A full set of changes in the source can be viewed at: https://github.com/traitecoevo/austraits.build/compare/v2.1.0...v3.0.0
Compared to the last version, this release contains substantial additions of new data and improvement of old data.
| version | dataset_id | taxa | sites | traits | records |
|---|---|---|---|---|---|
| 2.1.0 | 264 | 29230 | 4605 | 375 | 937243 |
| 3.0.0 | 283 | 28639 | 4721 | 446 | 997808 |
This release contains:
-
21 new sources added to the dataset: Apgaua_2015, Apgaua_2017, Atkinson_2020, Atkinson_2020_2, Curran_2009, Detombeur_2021, Du_2018, Du_2019, eFLOWER_2021, EsperonRodriguez_2019, Farrell_2012, Farrell_2013, Farrell_2017, Grootemaat_2015, Grootemaat_2017_1, Grootemaat_2017_2, Jurado_1991, Kanowski_2000, NSWFRD_2014, Stephens_2021, Wells_2012
-
29 new contributors: Andrea Lopez Martinez, Belinda Kenny, Christopher Szota, Claire Farrell, Corinna Orscheg, Deborah Apgaua, Don Butler, Elizabeth Tasker, Felix de Tombeur, Graham Zemunik, Herve Sauquet, Hugh Possingham, Jacob McC. Overton, Jessie Wells, Joe Atkinson, John Kanowski, Juerg Schoenenberger, Malcolm Gill, Maria von Balthazar, Nigel Warwick, Pengzhen Du, Ross Bradstock, Ruby Stephens, Saskia Grootemaat, Stefan Arndt, Susan Laurance, Susana Magallon, Timothy Curran, Veronica Shaw
-
2 sources removed– most replaced by corrected or updated sources above: EsperonRodriguez_2019_2, Jurado_1993
-
50428 new or updated records for 98 existing traits
-
15156 new records for 72 new traits: bark_Al_per_dry_mass, bark_ash_content_per_dry_mass, bark_B_per_dry_mass, bark_cellulose_per_dry_mass, bark_Cu_per_dry_mass, bark_Fe_per_dry_mass, bark_lignin_per_dry_mass, bark_Mn_per_dry_mass, bark_S_per_dry_mass, bark_tannin_per_dry_mass, bark_water_content_per_dry_mass, bark_Zn_per_dry_mass, cotyledon_function, establishment_light_environment_index, fire_flame_duration, fire_fuel_bed_bulk_density, fire_fuel_comsumption, fire_rate_of_spread, fire_smoulder_duration, fire_time_to_ignition, fire_total_burn_duration, flower_androecium_structural_merism, flower_androecium_structural_phyllotaxis, flower_androecium_structural_whorls_count, flower_anther_attachment, flower_anther_connective_extension, flower_anther_dehiscence, flower_anther_orientation, flower_fertile_stamens_count, flower_filament, flower_filament_fusion, flower_filament_fusion_to_inner_perianth, flower_gynoecium_phyllotaxis, flower_gynoecium_placentation, flower_ovary_fusion, flower_ovary_position, flower_ovules_per_functional_carpel_count, flower_perianth_differentiation, flower_perianth_fusion, flower_perianth_merism, flower_perianth_parts_count, flower_perianth_phyllotaxis, flower_perianth_symmetry, flower_perianth_whorls_count, flower_pollen_aperture_shape, flower_pollen_apertures_count, flower_structural_carpels_count, flower_structural_sex_type, flower_style_differentiation, flower_style_fusion, leaf_ash_content_per_dry_mass, leaf_cellulose_per_dry_mass, leaf_Co_per_dry_mass, leaf_Cr_per_dry_mass, leaf_curliness, leaf_phenol_content_per_dry_mass, leaf_relative_water_content_at_turgor_loss_point, leaf_relative_water_content_predawn, leaf_Se_per_dry_mass, leaf_Si_per_dry_mass, leaf_tannin_per_dry_mass, osmotic_potential_at_full_turgor, reproductive_light_environment_index, sapwood_specific_conductivity_theoretical, seedling_germination_location, senesced_leaf_Al_per_dry_mass, senesced_leaf_B_per_dry_mass, senesced_leaf_C_per_dry_mass, senesced_leaf_Na_per_dry_mass, stomatal_resistance_conductance_ambient, vessel_multiple_fraction, whole_plant_transpiration
Details on new studies:
| dataset_id | taxa | sites | traits | records |
|---|---|---|---|---|
| Apgaua_2015 | 8 | 1 | 12 | 360 |
| Apgaua_2017 | 91 | 1 | 10 | 990 |
| Atkinson_2020 | 1 | 36 | 4 | 720 |
| Atkinson_2020_2 | 11 | 6 | 2 | 100 |
| Curran_2009 | 4 | 4 | 10 | 778 |
| Detombeur_2021 | 96 | 25 | 9 | 2679 |
| Du_2018 | 20 | 1 | 5 | 540 |
| Du_2019 | 20 | 1 | 4 | 316 |
| eFLOWER_2021 | 234 | 1 | 29 | 5844 |
| EsperonRodriguez_2019 | 2 | 1 | 7 | 140 |
| Farrell_2012 | 2 | 1 | 4 | 44 |
| Farrell_2013 | 12 | 1 | 15 | 1417 |
| Farrell_2017 | 18 | 1 | 6 | 670 |
| Grootemaat_2015 | 32 | 4 | 19 | 6839 |
| Grootemaat_2017_1 | 10 | 3 | 50 | 2583 |
| Grootemaat_2017_2 | 25 | 4 | 10 | 859 |
| Jurado_1991 | 231 | 1 | 7 | 1331 |
| Kanowski_2000 | 150 | 17 | 25 | 9171 |
| NSWFRD_2014 | 2990 | 1 | 11 | 16519 |
| Stephens_2021 | 600 | 1 | 1 | 851 |
| Wells_2012 | 207 | 49 | 18 | 12833 |
This release was generated from source materials available at https://github.com/traitecoevo/austraits.build/releases/tag/v2.1.0
A full set of changes in the source can be viewed at: https://github.com/traitecoevo/austraits.build/compare/v2.0.0...v2.1.0
Compared to the last version, this release contains substantial additions of new data and improvement of old data, mainly by Lizzy Wenk.
| version | dataset_id | taxa | sites | traits | records |
|---|---|---|---|---|---|
| v2.0.0 | 256 | 22540 | 4475 | 362 | 677087 |
| v2.1.0 | 264 | 29230 | 4605 | 375 | 937243 |
This release contains:
-
9 new sources added to the dataset: Cheal_2017, EsperonRodriguez_2020, Everingham_2020, Jagdish_2020, MacinnisNg_2004, MacinnisNg_2016, Nicolle_2006, Sjostrom_2006, White_2020
-
1 sources removed– most replaced by corrected or updated sources above: EsperonRodriguez_2019
-
204456 new or updated records for 48 existing traits
-
55318 new records for 13 new traits: bark_morphology, calcicole_status, fire_and_establishing, fire_response_juvenile, fire_response_on_maturity, inundation_tolerance, reproductive_maturity, seed_longevity, seed_release, snow_tolerance, stem_density, transverse_branch_area_specific_conductivity, water_logging_tolerance
-
13 new contributors: Anne Sjostrom, Ashika Jagdish, Catriona Macinnis-Ng, David Cheal, Doug Frood, Jugo Ilic, Jürgen Kellermann, Kate McClenahan, Malcolm Trudgen, Matthew White, Michele Kohout, Steven Sinclair, Susan Everingham
Details on new studies:
| dataset_id | taxa | locations | traits | records |
|---|---|---|---|---|
| Cheal_2017 | 2023 | 1 | 10 | 12449 |
| EsperonRodriguez_2020 | 4 | 4 | 10 | 796 |
| Everingham_2020 | 42 | 76 | 16 | 19200 |
| Jagdish_2020 | 93 | 49 | 2 | 569 |
| MacinnisNg_2004 | 9 | 4 | 8 | 478 |
| MacinnisNg_2016 | 1 | 1 | 11 | 546 |
| Nicolle_2006 | 991 | 1 | 3 | 2144 |
| Sjostrom_2006 | 21950 | 1 | 4 | 77510 |
| White_2020 | 7060 | 1 | 22 | 146082 |
This release was generated from source materials available at https://github.com/traitecoevo/austraits.build/releases/tag/v2.0.0
A full set of changes in the source can be viewed at: https://github.com/traitecoevo/austraits.build/compare/v1.0.0...v2.0.0
Compared to the last version, this release
- Entails a substantial reworking of taxonomic alignments. We have switched from aligning against The Plant List (no longer updated) to aligning against the Australian Plant Census (best taxonomic information for Australian Plants).
- Also additions of new data and improvement of old data, mainly by Lizzy Wenk.
- The total number of taxa has apparently decreased, but many of the previous names were unmatched. Successful identifying and updating synonyms reduces the total taxa count, but with a higher fraction known:
- v1.0.0: 20,783 known taxa, 2,979 unknown
- v2.0.0: 21,143 known taxa, 1,397 unknown
- This switch involves some renaming:
species_namereplaced bytaxon_name,speciesreplaced bytaxon/taxa- the dataframe
taxonomyand been renamedtaxa - additional of new dataframe
taxonomic_updatesshowing all taxonomic updates
| version | dataset_id | taxa | sites | traits | records |
|---|---|---|---|---|---|
| v1.0.0 | 243 | 23383 | 4196 | 345 | 656467 |
| v2.0.0 | 256 | 22540 | 4475 | 362 | 677087 |
This release contains:
-
15 new sources added to the dataset: Caldwell_2016, Cheesman_2020, Choat_2006, Choat_2012, Geange_2020, Gosper_2004, Gosper_2012, Gosper_2018, Jordan_2015, Jordan_2020, Kirkpatrick_2020, McGlone_2015, Meers_2007, Read_2003, Williams_2011
-
2 sources removed– most replaced by corrected or updated sources above: Meers_2010, Williams_2020_1
-
29434 new or updated records for 73 existing traits
-
1503 new records for 16 new traits: competitive_stratum, guard_cell_length, hydraulic_safety_margin_50, leaf_transpiration, leaf_work_to_punch, leaf_work_to_punch_adjusted, leaf_work_to_shear, leaf_work_to_shear_adjusted, leaf_work_to_tear, leaf_work_to_tear_adjusted, parasitic, ploidy, stomatal_distribution, time_from_fire_to_fruit, water_potential_50percent_lost_conductivity, water_potential_88percent_lost_conductivity
-
20 new contributors: Aina Price, Alex Cheesman, Amanda Spooner, Amy Hahs, Ben Richardson, Brendan Choat, Carl Gosper, Catherine Tait, Colin Yates, Elizabeth Caldwell, Helen Coleman, Hellmut R. Toelken, James Kirkpatrick, Matthew McGlone, Monique Hallet, Raymond Carpenter, Richard Duncan, Sabine Kasel, Steven Clemants, Suzanne Prober
Details on new studies:
| dataset_id | taxa | locations | traits | records |
|---|---|---|---|---|
| Caldwell_2016 | 20 | 2 | 6 | 598 |
| Cheesman_2020 | 88 | 2 | 12 | 1685 |
| Choat_2006 | 4 | 3 | 16 | 948 |
| Choat_2012 | 37 | 15 | 4 | 104 |
| Geange_2020 | 1 | 1 | 5 | 487 |
| Gosper_2004 | 25 | 4 | 5 | 48 |
| Gosper_2012 | 344 | 1 | 7 | 1870 |
| Gosper_2018 | 117 | 1 | 8 | 536 |
| Jordan_2015 | 61 | 36 | 4 | 248 |
| Jordan_2020 | 1101 | 215 | 19 | 4464 |
| Kirkpatrick_2020 | 215 | 1 | 4 | 418 |
| McGlone_2015 | 1330 | 4 | 6 | 8205 |
| Meers_2007 | 127 | 1 | 11 | 1378 |
| Read_2003 | 16 | 2 | 19 | 890 |
| Williams_2011 | 943 | 1 | 12 | 9058 |
This release was generated from source materials available at https://github.com/traitecoevo/austraits.build/releases/tag/v1.0.0
A full set of changes in the source can be viewed at: https://github.com/traitecoevo/austraits.build/compare/v0.9.1...v1.0.0
Compared to the last version, this release contains
- substantial additions of new data and improvement of old data, including new traits.
- additions of a contexts field, to allow for variation in measurement conditions within a site
This will also be the last release using taxonomy aligned to TaxonStand
| version | dataset_id | species | sites | traits | records |
|---|---|---|---|---|---|
| v0.9.1 | 175 | 21892 | 3436 | 170 | 467523 |
| v1.0.0 | 243 | 23383 | 4196 | 345 | 656467 |
This release contains:
-
98 new sources added to the dataset: Angevin_2011, Baker_2019, Bloomfield_2018, Buckton_2019, Cernusak_2006, Cernusak_2011, Cooper_2013, CPBR_2002, Cross_2009, Crous_2013, Crous_2019, Curtis_2012, Dong_2017, Duan_2015, Dwyer_2018, EsperonRodriguez_2019, EsperonRodriguez_2019_2, Falster_2003, Firn_2019, French_2017, Gallagher_2012, Gallagher_2015, Gallagher_2018, Geange_2017, Ghannoum_2010, Gray_2019, Gross_2005, Hall_1981, Hocking_1982, Hocking_1986, Huang_2015, Jin_2019, Jordan_2001, Jurado_1992, Kotowska_2020, Kuo_1982, Leigh_2003, Leigh_2006, Leishman_2007, Lewis_2015, Meers_2010, Metcalfe_2009, Metcalfe_2020_1, Metcalfe_2020_2, Milberg_1997, Milberg_1998, Mokany_2015, Moore_2019_2, Muir_2014, Nicholson_2017, Onoda_2010, Ooi_2007, Ooi_2018, Pickering_2014, Pickup_2002, Pickup_2005, Pollock_2012, Pollock_2018, Prior_2016, RBGSYD_2014_2, Read_2005, Reynolds_2018, Richards_2008, Roderick_1999, Roderick_2002, Rosell_2014, Sams_2017, Schmidt_1993, Schmidt_1997, Schmidt_2010, Schulze_2006, Schulze_2006_2, Schulze_2014, Smith_1996, Smith_2012, Soper_2014, Staples_2019, Stewart_1995, Taseski_2017, Taylor_2008, Thomas_2017, Tomlinson_2019, Turner_2010, Veneklaas_2003, Venn_2011, Vesk_2019, Vlasveld_2018, Warren_2005, Warren_2006, Weerasinghe_2014, Westman_1977, Williams_2005, Williams_2020_1, Wright_2009, Wright_2019, Zanne_2009, Zieminska_2013, Zieminska_2015
-
30 sources removed– most replaced by corrected or updated sources above: Angevin_2010, BFD_1974, Bolza_1975, CAB_2009, Chave_2009, Chinh_1999, Chudnoff_1984, CIRAD_2009, Cornellison_0000, CPRR_2002, Cross_2011, Desh_1996, Dimitri_1973, Dwyer_2017_2, EsperonRodriguez_0000, EsperonRodriguez_0000_2, Flynn_2001, Goldsmith_1981, Hong_1999, ICRAF_2009, Jin_0000, Martawijaya_1992, Meier_2007, Ooi_0000, Prospect_2009, RBGSYD_0000, Seng_1951, Wells_2009, Westoby_2016, Wright_2004
-
258809 new or updated records for 96 existing traits
-
53285 new records for 152 new traits: bark_C_per_dry_mass, bark_Ca_per_dry_mass, bark_delta13C, bark_delta15N, bark_density, bark_K_per_dry_mass, bark_Mg_per_dry_mass, bark_N_per_dry_mass, bark_Na_per_dry_mass, bark_P_per_dry_mass, ca, carotenoid_per_area, carotenoid_per_dry_mass, cell_rubisco_concentration, cell_rubisco_N_per_total_N, cell_thylakoid_N_per_total_N, chlorophyll_A_B_ratio, chlorophyll_A_per_area, chlorophyll_A_per_dry_mass, chlorophyll_B_per_area, chlorophyll_B_per_dry_mass, chlorophyll_per_area, chlorophyll_per_dry_mass, ci, ci_at_Amax, ci_at_Asat, ci_over_ca, dead_wood_Ca_per_dry_mass, dead_wood_K_per_dry_mass, dead_wood_Mg_per_dry_mass, dead_wood_N_per_dry_mass, dead_wood_Na_per_dry_mass, dead_wood_P_per_dry_mass, dispersers, epidermal_cell_density_abaxial, epidermal_cell_density_adaxial, epidermal_cell_density_both_sides, epidermis_thickness, epidermis_thickness_lower_leaf_surface, epidermis_thickness_upper_leaf_surface, fire_cued_seeding, flower_count_maximum, flower_N_per_dry_mass, fruit_breadth, fruit_Ca_per_dry_mass, fruit_K_per_dry_mass, fruit_mass, fruit_Mg_per_dry_mass, fruit_N_per_dry_mass, fruit_P_per_dry_mass, fruit_S_per_dry_mass, fruit_type_botanical, fruit_wall_width, germination, insoluable_protein_per_area, Jmax_per_area, leaf_absorption, leaf_Cl_per_dry_mass, leaf_dark_transpiration_per_area, leaf_delta18O, leaf_density, leaf_mass_to_stem_mass, leaf_PRI, leaf_reflectance, leaf_reflectance_near_infrared, leaf_soluable_starch_per_mass, leaf_soluable_sugars_per_mass, leaf_total_non-structural_carbohydrates_per_area, leaf_total_non-structural_carbohydrates_per_mass, leaf_transmission, leaf_transpiration_at_Asat, leaf_water_content_per_dry_mass, leaf_water_content_per_fresh_mass, leaf_water_content_per_saturated_mass, leaf_xylem_delta15N, modulus_of_elasticity_bark, modulus_of_elasticity_stem, modulus_of_elasticity_xylem, palisade_cell_length, palisade_cell_width, palisade_layer_number, pendulous_leaves, photosynthetic_bark, physical_defence, pollination_syndrome, pollination_system, propagule_longevity, resprouting_proportion_individuals, resprouting_strength, root_C_per_dry_mass, root_delta13C, root_delta15N, root_dry_matter_content, root_mass_fraction, root_N_per_dry_mass, root_shoot_ratio, root_soluable_starch_per_mass, root_soluable_sugars_per_mass, root_xylem_delta15N, seed_Ca_concentration, seed_K_concentration, seed_Mg_concentration, seed_N_concentration, seed_S_concentration, sex_type, soil_seedbank, soluable_protein_per_area, soluable_starch_per_area, soluable_sugars_per_area, specific_taproot_length, spinescence, sprout_depth, starch_per_area, stem_count_categorical, stem_hydraulic_conductivity, stem_mass_fraction, stem_respiration_per_dry_mass, stem_soluable_starch_per_mass, stem_soluable_sugars_per_mass, stem_water_content_per_saturated_mass, stem_water_delta18O, stomatal_conductance_per_area_ambient, stomatal_conductance_per_area_at_Asat, stomatal_density_abaxial, stomatal_density_adaxial, support_fraction, Vcmax_per_area, vegetative_regeneration, vein_angle_secondary, vein_density, vessel_density, vessel_diameter, vessel_diameter_hydraulic, vessel_lumen_fraction, vessel_wall_fraction, vine_climbing_mechanism, water_use_efficiency_intrinsic, water_use_efficiency_photosynthetic, wood_axial_parenchyma_fraction, wood_C_per_dry_mass, wood_Ca_per_dry_mass, wood_conduit_fraction, wood_delta13C, wood_delta15N, wood_fibre_fraction, wood_K_per_dry_mass, wood_Mg_per_dry_mass, wood_N_per_dry_mass, wood_Na_per_dry_mass, wood_P_per_dry_mass, wood_ray_fraction, wood_tracheid_fraction
-
rlength(new_people)new contributors: Aaron Phillips, Adrienne Nicotra, Aine Nicholson, Alessandro Conti, Allison Frith, Andrea Leigh, Andrew Baker, Anna Salomaa, Anne Fuchs, Annette Muir, Ben French, Benjamin Smith, Bree-Anne Laugier-Kitchener, Bronwyn Collins, Brook Clinton, Carolyn Vlasveld, Catherine Pickering, Charles Warren, Chris Fahey, Chris Guinane, Christiane Ludwig, Claire Laws, Colin P. Osborne, Collin W. Ahrens, Dana Lanceman, Daniel Metacalfe, Daniel Montoya Londono, Daniel Taylor, David Tissue, Dean Nicolle, Des Nelson, Dominic Neyland, Elissa McFarlane, Ellen Curtis, Emma Gray, Erica Williams, Fiona Soper, Frank van Langevelde, Freya Thomas, Genevieve Buckton, George Perry, George Stewart, Guomin Huang, Guy Taseski, Hannah MacPherson, Hoa Ran Lai, Honglang Duan, Iain Colin Prentice, Ian Kealley, J. Bastow Wilson, Jacob McOverton, James Camac, James Lewis, Jennifer Read, Jian Yen, John Foster, John Kuo, Juergen Kellermann, Jugi Ilic, Julieta A. Rosell, Kaely Kreger, Karen Marais, Kasia Zieminska, Kathryn Willis, Keith Bloomfield, Kristine Crous, Lasantha Weerasinghe, Liz Lindsay, Loren Pollitt, Lucas Cernusak, Luka Kovac, Luke Shoo, Malcolm Trudgeon, Margaret Mayfield, Mark G. Tjoelker, Marlien van der Merwe, Martin Lambert, Martyna Kotowska, Mary Maconochie, Matthew Alfonzetti, Matthew Tom Harrison, Maurizio Rossetto, Melinda Pickup, Meredith Cosgrove, Michael Roderick, Michael Sams, Michelle Cochrane, Neil C. Turner, Neil Turner, Nicholas Moore, Nick Williams, Ning Dong, Oula Ghannoum, Owen Atkin, Paul Rymer, Per Milberg, Peter Hocking, Pieter Poot, R.J.Williams, Renee Smith, Riah Mason, Richard Mazanec, Rob Polmear, Robert Lanfear, Ronald Gardiner, Sonya Geange, Sophia Amini, Susanna Venn, Suzanne Schmidt, Tammy Haslehurst, Tanja Lenz, Tara Boreham, Thomas Pyne, TJ Hall, Tom North, Tony French, Trevor Meers, Ule Niinemets, Victoria Reynolds, W.E Westman, Willi A. Brand, William Cornwell, William Morris, Yusuke Onoda
Details on new studies:
| dataset_id | species | locations | traits | records |
|---|---|---|---|---|
| Angevin_2011 | 97 | 1 | 7 | 529 |
| Baker_2019 | 57 | 39 | 3 | 114 |
| Bloomfield_2018 | 79 | 7 | 24 | 26932 |
| Buckton_2019 | 23 | 1 | 26 | 2203 |
| Cernusak_2006 | 4 | 1 | 10 | 303 |
| Cernusak_2011 | 8 | 6 | 21 | 1644 |
| Cooper_2013 | 2703 | 1 | 11 | 26983 |
| CPBR_2002 | 886 | 1 | 7 | 6889 |
| Cross_2009 | 50 | 1 | 4 | 194 |
| Crous_2013 | 1 | 1 | 8 | 391 |
| Crous_2019 | 1 | 1 | 13 | 2366 |
| Curtis_2012 | 95 | 4 | 14 | 1326 |
| Dong_2017 | 242 | 27 | 10 | 3909 |
| Duan_2015 | 1 | 1 | 13 | 2120 |
| Dwyer_2018 | 17 | 1 | 2 | 193 |
| EsperonRodriguez_2019 | 4 | 4 | 10 | 796 |
| EsperonRodriguez_2019_2 | 2 | 1 | 7 | 140 |
| Falster_2003 | 38 | 2 | 3 | 114 |
| Firn_2019 | 45 | 4 | 6 | 2049 |
| French_2017 | 12 | 1 | 3 | 36 |
| Gallagher_2012 | 94 | 1 | 7 | 302 |
| Gallagher_2015 | 802 | 1 | 1 | 927 |
| Gallagher_2018 | 62 | 4 | 5 | 1899 |
| Geange_2017 | 3 | 1 | 19 | 4872 |
| Ghannoum_2010 | 2 | 1 | 20 | 2364 |
| Gray_2019 | 18 | 4 | 12 | 818 |
| Gross_2005 | 1121 | 1 | 2 | 2279 |
| Hall_1981 | 20 | 1 | 2 | 178 |
| Hocking_1982 | 2 | 1 | 14 | 28 |
| Hocking_1986 | 9 | 9 | 27 | 189 |
| Huang_2015 | 1 | 1 | 18 | 870 |
| Jin_2019 | 1 | 184 | 1 | 184 |
| Jordan_2001 | 1299 | 1 | 7 | 8208 |
| Jurado_1992 | 105 | 1 | 1 | 315 |
| Kotowska_2020 | 16 | 67 | 22 | 2992 |
| Kuo_1982 | 8 | 8 | 21 | 168 |
| Leigh_2003 | 1 | 1 | 5 | 108 |
| Leigh_2006 | 1 | 1 | 12 | 358 |
| Leishman_2007 | 88 | 7 | 8 | 905 |
| Lewis_2015 | 1 | 1 | 29 | 1902 |
| Meers_2010 | 127 | 1 | 11 | 1378 |
| Metcalfe_2009 | 285 | 8 | 17 | 4518 |
| Metcalfe_2020_1 | 308 | 1 | 20 | 1643 |
| Metcalfe_2020_2 | 603 | 1 | 19 | 9277 |
| Milberg_1997 | 4 | 2 | 6 | 24 |
| Milberg_1998 | 21 | 1 | 4 | 81 |
| Mokany_2015 | 1180 | 1 | 3 | 2387 |
| Moore_2019_2 | 52 | 1 | 12 | 2080 |
| Muir_2014 | 9 | 5 | 3 | 25 |
| Nicholson_2017 | 30 | 1 | 2 | 115 |
| Onoda_2010 | 32 | 4 | 7 | 1085 |
| Ooi_2007 | 181 | 98 | 2 | 14742 |
| Ooi_2018 | 5 | 1 | 1 | 25 |
| Pickering_2014 | 169 | 51 | 4 | 691 |
| Pickup_2002 | 20 | 1 | 2 | 322 |
| Pickup_2005 | 70 | 4 | 5 | 389 |
| Pollock_2012 | 20 | 135 | 10 | 3996 |
| Pollock_2018 | 17 | 18 | 6 | 910 |
| Prior_2016 | 7 | 1 | 3 | 21 |
| RBGSYD_2014_2 | 6421 | 1 | 14 | 81488 |
| Read_2005 | 40 | 3 | 8 | 1562 |
| Reynolds_2018 | 4 | 1 | 10 | 551 |
| Richards_2008 | 74 | 39 | 51 | 891 |
| Roderick_1999 | 57 | 28 | 7 | 453 |
| Roderick_2002 | 4 | 1 | 4 | 500 |
| Rosell_2014 | 62 | 4 | 8 | 496 |
| Sams_2017 | 234 | 8 | 6 | 1042 |
| Schmidt_1993 | 402 | 1 | 3 | 522 |
| Schmidt_1997 | 46 | 1 | 11 | 388 |
| Schmidt_2010 | 19 | 2 | 20 | 2258 |
| Schulze_2006 | 406 | 1 | 3 | 1263 |
| Schulze_2006_2 | 72 | 74 | 7 | 2483 |
| Schulze_2014 | 248 | 66 | 13 | 2494 |
| Smith_1996 | 87 | 5 | 17 | 11342 |
| Smith_2012 | 1 | 1 | 27 | 1014 |
| Soper_2014 | 34 | 5 | 11 | 1044 |
| Staples_2019 | 166 | 1 | 4 | 9686 |
| Stewart_1995 | 114 | 4 | 6 | 863 |
| Taseski_2017 | 22 | 1 | 5 | 110 |
| Taylor_2008 | 7 | 4 | 11 | 390 |
| Thomas_2017 | 18 | 5 | 7 | 126 |
| Tomlinson_2019 | 12 | 11 | 11 | 3888 |
| Turner_2010 | 17 | 4 | 7 | 671 |
| Veneklaas_2003 | 29 | 1 | 18 | 565 |
| Venn_2011 | 40 | 1 | 3 | 120 |
| Vesk_2019 | 46 | 1 | 3 | 4439 |
| Vlasveld_2018 | 319 | 1 | 5 | 2613 |
| Warren_2005 | 1 | 1 | 16 | 240 |
| Warren_2006 | 29 | 2 | 13 | 906 |
| Weerasinghe_2014 | 26 | 63 | 17 | 1552 |
| Westman_1977 | 16 | 1 | 30 | 559 |
| Williams_2005 | 182 | 1 | 6 | 1063 |
| Williams_2020_1 | 943 | 1 | 12 | 9005 |
| Wright_2009 | 41 | 8 | 13 | 1272 |
| Wright_2019 | 18 | 1 | 37 | 7836 |
| Zanne_2009 | 326 | 1 | 1 | 409 |
| Zieminska_2013 | 23 | 4 | 10 | 720 |
| Zieminska_2015 | 67 | 3 | 12 | 2464 |
This release was generated from source materials available at https://github.com/traitecoevo/austraits.build/releases/tag/v0.9.1
A full set of changes in the source can be viewed at: https://github.com/traitecoevo/austraits.build/compare/v0.9.0...v0.9.1
Compared to the last version, this release contains substantial additions of new data and improvement of old data, mainly by Lizzy Wenk and Caitlan Baxter, who were employed via funding from the Australian Research Data Commons.
| version | dataset_id | species | sites | traits | records |
|---|---|---|---|---|---|
| 0.9.0 | 139 | 19904 | 260 | 86 | 349261 |
| 0.9.1 | 175 | 21892 | 3436 | 170 | 467523 |
This release contains
- 45 new sources added to the dataset: Ahrens_2019, ANBG_2019, Blackman_2010, Chen_2017, Clarke_2015, Cornellison_0000, Crisp_2017, Dwyer_2017_2, EsperonRodriguez_0000, EsperonRodriguez_0000_2, Funk_2016, Gardiner_2019, GrassBase_2014, Groom_1997, Groom_2010, Guilherme_Pereira_2018, Guilherme_Pereira_2019, Hayes_2014, Hayes_2018, Jin_0000, Kew_2019_1, Kew_2019_2, Kew_2019_3, Kew_2019_4, Kew_2019_5, Kew_2019_6, Lawson_2015, Lee_2019, Lim_2017, Lusk_2010, Lusk_2014, Mokany_2008, Moles_2000, Moles_2003, Moles_2011, Moore_2019, Munroe_2019, Ooi_0000, Osborne_2014, RBGSYD_2014, Schulze_1998, Sendall_2016, Standish_2019, Westoby_2014, Wills_2018
- 9 sources removed: Blackman_2014, Butler_2011, Chen_2015_1, Chen_2015_2, Crisp_1984, Gallagher_2011_2, Gleason_2012, Leishman_2011, Schulze_0000 -- these were replaced by corrected or updated sources
- 427471 new records for 83 existing traits
- 40052 new records for 87 new traits – basal_diameter, cell_epidermis_Ca_per_fresh_mass, cell_epidermis_P_per_fresh_mass, cell_hypodermis_Ca_per_fresh_mass, cell_hypodermis_P_per_fresh_mass, cell_internal_parenchyma_Ca_per_fresh_mass, cell_internal_parenchyma_P_per_fresh_mass, cell_palisade_mesophyll_Ca_per_fresh_mass, cell_palisade_mesophyll_P_per_fresh_mass, cell_sclerenchyma_Ca_per_fresh_mass, cell_sclerenchyma_P_per_fresh_mass, cell_spongy_mesophyll_Ca_per_fresh_mass, cell_spongy_mesophyll_P_per_fresh_mass, dormancy_type, fire_response_detailed, fire-cued_seeding, fv_over_fm, germination_treatment, huber_value, leaf_Al_per_dry_mass, leaf_angle, leaf_B_per_dry_mass, leaf_Ca_per_dry_mass, leaf_Cu_per_dry_mass, leaf_Fe_per_dry_mass, leaf_fresh_mass, leaf_fresh_mass_per_area, leaf_hairs_adult, leaf_hairs_juvenile, leaf_hydraulic_conductance, leaf_hydraulic_vulnerability, leaf_light_respiration_per_area, leaf_Mg_per_dry_mass, leaf_Mn_per_dry_mass, leaf_Mo_per_dry_mass, leaf_Na_per_dry_mass, leaf_photosynthetic_nitrogen_use_efficiency_maximum, leaf_photosynthetic_nitrogen_use_efficiency_saturated, leaf_photosynthetic_phosphorus_use_efficiency_maximum, leaf_photosynthetic_phosphorus_use_efficiency_saturated, leaf_S_per_dry_mass, leaf_spines_adult, leaf_transpiration_at_Amax, leaf_turgor_loss_point, leaf_Zn_per_dry_mass, life_form, modified_NDVI, modulus_of_elasticity, modulus_of_rupture, N_to_P_ratio, osmotic_potential, photosynthetic_rate_per_area_maximum, photosynthetic_rate_per_area_saturated, photosynthetic_rate_per_dry_mass_maximum, photosynthetic_rate_per_dry_mass_saturated, plant_width, resorption_leaf_N, resorption_leaf_P, root_morphology, seed_oil_content, seed_protein_content, seed_storage_location, seed_texture, seed_viability, senesced_leaf_Ca_per_dry_mass, senesced_leaf_Cu_per_dry_mass, senesced_leaf_Fe_per_dry_mass, senesced_leaf_K_per_dry_mass, senesced_leaf_Mg_per_dry_mass, senesced_leaf_Mn_per_dry_mass, senesced_leaf_Mo_per_dry_mass, senesced_leaf_N_per_dry_mass, senesced_leaf_P_per_dry_mass, senesced_leaf_S_per_dry_mass, senesced_leaf_Zn_per_dry_mass, soil_salinity_tolerance, specific_root_length, stem_C_per_dry_mass, stem_dry_matter_content, stem_N_per_dry_mass, stomatal_conductance_per_area_at_Amax, tap_root, thickest_root_diameter, water_balance_index, water_potential_midday, water_potential_predawn, water_tolerance
- 70 new contributors: Collin Ahrens, Lydia Guja, Tim Brodribb, Gregory Jordan, Mark Ooi, Gregory Cawthray, John Dwyer, Caitlan Baxter, Gordon Sanson, Cheryl Edwards, Manuel Esperon-Rodriguez, Sally A. Power, Mark G.Tjoelker, Paul D. Rymer, Jennifer Funk, Rachel Standish, Derek Clayton, Maria Vorontsova, Philip K Groom, Caio Guilherme Pereira, Odhran S. O’Sullivan, Lasantha K. Weerasinghe, Owen K. Atkin, Patrick Hayes, Odhran S. O’Sullivan, Patrick E. Hayes, Peta Clode, Daniel Jin, Dieter Hochuli, Udayangani Liu, Etienne Laliberté, James Lawson, Brad Oberle, Amy E. Zanne, Jeff R. Powell, Jessica L. Rigg, Jocelyn Howell, Felix Lim, Laura Pollock, Judy Egan, Karel Mokany, Mike Olsen, Timothy Staples, Julian Ash, Ben D. Moore, Jane L. DeGabriel, Samantha Munroe, Greg Guerin, Ben Sparrow, Peter Myerscough, Tony Auld, Andrew O’Reilly-Nugent, Richard P. Duncan, Colin Osborne, plantNET, Alison Shapcott, State Herbarium of South Australia, Jürgen Kellermann, Willi Brand, Waltraud Schulze, Inge Schulze, Kerrie Sendall, Matthew Daws, Yue Phin David Jeremiah-Seok Tng, Greg J Jordan, Don Bulter, Jarrah Wills, Jennifer Firn, John Herbohn, Jing Hu
This is the first major release of the AusTraits database.
This release was generated from source materials available at https://github.com/traitecoevo/austraits.build/releases/tag/v0.9.0
This release includes data accumulated until May 2019, but excluding data removed where there is ongoing restructuring or where data have not been correctly attributed.
Work up to this point was funded from ARC fellowship grants to Gallagher and Falster, as well as funding from Macquarie University (fellowship to Gallagher) and the Science Industry Endowment Fund (for Falster's salary in 2016).