global.scss

@import './variables.scss';
@import './custom-icons.scss';
@import './header.scss';
@import './mixins.scss';

/* locks scroll bar on to prevent horizontal jump when content render */
body {
    overflow-y: scroll;
    text-align: left;
    margin: 0;
    padding: 0;
}

.modal-header .close::before {
    content: 'x' !important;
}

.scrollbarAlwaysVisible {
    @include scrollbar-always-visible;
}
.hideScrollbar {
    &::-webkit-scrollbar {
        display: none;
    }
    -ms-overflow-style: none;
    scrollbar-width: none;
}

//get rid of blue border around active button
button:active,
button:focus,
div:focus,
div:active {
    outline: none !important;
}

.text-white {
    color: #fff;
}

.form-group {
    margin-bottom: 5px;

    label {
        font-size: 12px;
        margin-bottom: 2px;
    }
}

.posRelative {
    position: relative;
}

/* importants are necessary for override of legacy style */
.btn-default {
    background-image: linear-gradient(to bottom, #fff 0, #eee 100%) !important;
    color: $text-color !important;
}

.btn.noBorderRadius {
    -webkit-border-radius: 0 !important;
    -moz-border-radius: 0 !important;
    border-radius: 0 !important;
}

a {
    cursor: pointer;
    text-decoration: none;

    &:hover {
        text-decoration: underline;
    }

    &.underline {
        text-decoration: underline;
    }
}

.pipeSeperator {
    margin: 0 8px;
}

/* Buttons */

.cta {
    // "Call To Action"
    background: linear-gradient(to bottom, #1f8cc5 50%, #1982b8 100%);
    border: 0;
    border-bottom: 1px solid rgba(0, 0, 0, 0.2);
    border-radius: 2px;
    color: rgba(255, 255, 255, 1);
    display: block;
    text-align: center;
    font: normal normal 500 11px/19px 'Helvetica Neue', Helvetica, Arial,
        sans-serif;
    padding: 5px 10px;

    &:hover:not(:disabled) {
        cursor: pointer;
        background: linear-gradient(to bottom, #1982b8 50%, #1f8cc5 100%);
        color: #fff;
    }
    &:disabled {
        cursor: default;
        background: $lightGrey;
        border-bottom: 0;
        color: $darkGrey;
    }
}

/* Tables */
th.reactable-header-sortable {
    &:focus {
        outline: 0;
    }
}

th.reactable-header-sort-desc:after {
    content: '\25B2';
    padding-left: 10px;
    padding-bottom: 5px;
}

th.reactable-header-sort-asc:after {
    content: '\25BC';
    padding-left: 10px;
    padding-bottom: 5px;
}

.table-border-top .reactable-column-header {
    th {
    }
}

#content {
    margin-top: 8px;
}

/* override for rc-tooltip */

.rc-tooltip {
    border-radius: $border-radius-base;
    box-shadow: $boxShadow;
    padding: 0;
    opacity: 1;

    &.hideTooltipArrow {
        .rc-tooltip-arrow {
            display: none;
        }
    }

    &.rc-tooltip-placement-topRight {
        .rc-tooltip-arrow {
            right: 5px !important;
        }
    }
}

.menuTabs {
    ul.nav {
        margin: 0 auto;
        display: flex;
        background: $main-bg;

        a {
            font-size: $font-size-small;
            padding: 5px 8px;
        }
        li {
            white-space: nowrap;
            margin-bottom: -2px;
        }
    }

    .tab-content {
        min-height: 100px !important;
        padding: 10px 0 10px 0 !important;
        .msk-tab {
            padding-left: 10px !important;
            padding-right: 10px !important;
            margin: 0 auto;
        }
    }
}

.secondaryNavigation {
    > ul {
        margin-top: -19px;
        padding-left: 20px;
        margin-left: -20px;
        margin-right: -20px;
    }

    > ul.nav {
        border-bottom: 1px solid $borderColor;
    }

    li {
        a {
            font-size: $font-size-small;
            padding: 8px 0px !important;
            margin-right: 25px !important;
            background: none !important;
            border: none !important;

            &:hover {
                text-decoration: underline;
            }
        }

        &.active a {
            border-bottom: 2px solid $brand-primary !important;
        }
    }

    .tab-content {
        margin-top: $standardMargin;
    }
}

.pillTabs {
    > .nav.nav-pills {
        margin-bottom: $standardMargin;

        li {
            margin-bottom: 2px;
            padding-right: 8px;

            a {
                background: #eee;
                border-top: none !important;
            }

            &.active a {
                background: $brand-primary;
                border-top: none !important;
                &:hover {
                    color: #fff !important;
                }
            }
        }
    }

    li a {
        font-size: 12px;
        padding: 10px 6px !important;
        cursor: pointer;
        line-height: 0.8px;
    }

    .msk-tab {
        margin-top: 10px;
    }
}

.comparisonMutationMapperTabs {
    height: 0;
    padding-top: 5px;
}

.mainTabs {
    > .nav {
        @extend .portalWidth;
        margin: 0 auto;
        position: relative;
        z-index: 1;

        background: $main-bg !important;

        display: flex;

        > li {
            white-space: nowrap;

            &:not(.active) {
                a:hover {
                    background: none !important;
                    border-color: transparent !important;
                }
            }
        }

        .active {
            a {
                border-top: 3px solid $brand-primary !important;
                padding-top: 9px;
                text-decoration: none !important;
            }
        }
    }

    > .tab-content {
        padding: 20px 0 20px 0;
        background: #fff;
        border-top: 1px solid #ddd;
        margin-top: -1px;
        min-height: 50px;
        position: relative;

        .tabLoader {
            position: relative;
            left: 50%;
            top: 50%;
        }

        hr {
            margin-top: 5px;
            margin-bottom: 20px;
        }

        > .msk-tab {
            @extend .portalWidth;
            margin: 0 auto;
        }
    }
}

.urlError {
    width: 500px;
    margin: 0 auto;
    text-align: center;
    i.fa-warning {
        font-size: 80px;
    }
    h3 {
        margin-bottom: 20px;
    }
    ul {
        list-style: none;
        li {
            padding-bottom: 7px;
        }
    }
}

.queryInvalid {
    width: 800px;
    margin: 0 auto;
    text-align: center;
}

.table tbody tr td {
    padding: 3px 10px !important;
    border-top: none;
}

.table {
    margin-bottom: 5px;
}

.hiddenByPosition {
    position: absolute;
    top: -9999px;
    left: -9999px;
}

// corrects for a problem with build of react-bootstrap and react-select (unicode corrupted when build on linux  machines)
.Select--multi .Select-value-icon {
    text-indent: -9999px;
    line-height: 0; /* Collapse the original line */

    &::after {
        content: '✖';
        text-indent: 0;
        display: block;
        line-height: initial; /* New content takes up original line height */
    }
}

.modal-header .close {
    &::before {
        content: '✖';
    }
    span {
        display: none;
    }
}

.subhead-dark #mainColumn {
}

.headBlock {
    background: $main-bg;
    margin-top: -$gutterWidth;
    position: relative;
    padding-top: 10px;
    padding-left: $gutterWidth;
    padding-right: $gutterWidth;
    padding-bottom: 10px;

    &:empty {
        padding-bottom: 0;
    }

    .headBlurb {
        padding: 0 $gutterWidth 10px $gutterWidth;
    }
}

#mainColumn {
    padding-top: $gutterWidth;
}

.fixedWidth {
    #mainColumn {
        flex: 1;
        padding-left: 0;
        padding-right: 0;
        line-height: 26px;
    }

    .contentWrapper {
    }

    header {
        padding-left: 0;
        padding-right: 0;
    }

    &.twoColumn {
        .contentWrapper {
            //.contentWidth {
            //  padding-right: 0;
            //}
        }
    }
}

.twoColumn {
    #mainColumn {
        padding-right: $gutterWidth;
    }
}

h1 {
    margin-top: 30px !important;
    font-family: Helvetica Neue, Helvetica, Arial, sans-serif !important;
    margin-bottom: 10px !important;
}

h1,
h2,
h3,
h4,
h5,
h6 {
    color: $headerColor !important;
    &:first-child {
        margin-top: 0 !important;
    }
}

h1 {
    font-size: 24px;
}

h2 {
    font-size: 20px;
}

h3 {
    font-size: 16px;
}

#rightColumn {
    background: $lightBlue;
    padding: $gutterWidth 0;
    font-size: 12px;
    flex: 0 0 325px;
    border-right: 1px solid $borderColor;
    border-left: 1px solid $borderColor;

    .rightBarSection {
        h3 {
            border-bottom: 1px solid #ddd;
            margin: 0 0 4px 0;
            padding-bottom: 4px;
            color: $brand-primary;
        }
        padding: 0 $gutterWidth 10px $gutterWidth;
    }

    .exampleQueries {
        ul {
            margin: 0 0 0 15px;
            padding: 0;

            li {
                color: #cfd9ea;
                text-indent: -3px;
            }
        }
    }
}

.fixedWidth .contentWidth {
    width: 1200px;
    padding-left: 20px;
    padding-right: 20px;
    margin: 0 auto;
}

.noMargin {
    .contentWidth {
        padding-left: 0;
        padding-right: 0;
    }
    header {
        padding-left: 20px;
        padding-right: 20px;
    }
}

.mainContainer {
    display: flex;
    flex-direction: column;
}

.contentWidth {
    display: flex;
    justify-content: space-between;
    padding-left: 20px;
    padding-right: 20px;

    #mainColumn {
        flex: 1;
        padding-left: 0;
        min-height: 80vh;
        max-width: 100%;
    }

    &.noMargin {
        padding-left: 0;
        padding-right: 0;
    }
}

.alert {
    border-color: #ddd;
    color: inherit;
}

.alert-info {
    background: $lightBlue;
}

.borderedChart {
    @include dashed-border-section;
    position: relative;
    max-width: 100%;

    .chartDownloadButtons {
        position: absolute;
        right: 10px !important;
        top: 10px !important;
        z-index: 10;
    }
}

h3.hr {
    margin: 0 30px;
    border: 1px dashed $borderColor !important;
}

.popover {
    &.cbioTooltip {
        position: absolute !important;
        display: block !important;
        max-width: 600px !important;
        border-radius: $border-radius-base;
        box-shadow: 0 2px 3px rgba(0, 0, 0, 0.2);
        div:last-child {
            white-space: normal;
        }

        p {
            margin-bottom: 0 !important;
        }

        .popover-content,
        p,
        td {
            font-size: 11px !important;
        }
    }
}

.inlineBlock {
    display: inline-block;
}

.displayBlock {
    display: block;
}

.positionAbsolute {
    position: absolute;
}

.noOqlWarning {
    color: #74bedb;
}

.tabMessageContainer {
    padding-bottom: $standardMargin;
    &:empty {
        display: none;
    }

    > :last-child {
        margin-bottom: 0 !important;
    }
}

.alert {
    padding: 5px 10px !important;
}

.whiteBackground {
    background: #fff;
}

.form-group.form-group-custom {
    margin-right: 15px;
    padding-right: 15px;
    border-right: 1px dashed $borderColor;
    display: flex !important;
    align-items: center;

    h5 {
        font-weight: bold !important;
        margin-right: 5px;
    }

    &:last-child {
        border-right: none;
    }
}

.studyViewHeader {
    margin-top: $gutterWidth;
}

.staticPage {
    padding-bottom: $gutterWidth;

    .markdown-body {
        h1 {
            display: none !important;
        }

        h2 {
            font-size: 20px;
        }

        h3 {
            font-size: 18px;
        }
    }
}

.beta-text {
    color: #ffa500;
    text-decoration: none;
}

.text-with-ellipsis {
    white-space: nowrap;
    overflow: hidden;
    -ms-text-overflow: ellipsis;
    text-overflow: ellipsis;
}

.cbioportal-frontend h1.blackHeader,
h2.blackHeader,
h3.blackHeader,
h4.blackHeader,
h5.blackHeader,
h6.blackHeader {
    color: black !important;
}

.noselect {
    -webkit-user-select: none;
    -moz-user-select: none;
    -ms-user-select: none;
    user-select: none;
}

.nowrap {
    white-space: nowrap;
}

.nomouse {
    pointer-events: none;
}

h2.divider {
    margin: 40px 0 !important;
    padding-bottom: 10px;
    border-bottom: 1px solid $borderColor;
}

.myoverlay {
    position: fixed;
    top: 0;
    z-index: 10000;
    bottom: 0;
    left: 0;
    right: 0;
    background: rgba(0, 0, 0, 0.5);

    .myclose {
        position: absolute;
        top: 5px;
        right: 12px;
        z-index: 200;

        button {
            cursor: pointer;
        }
    }

    .modal-iframe {
        z-index: 100;
        margin: 0px;
        position: absolute;
        top: 0px;
        bottom: 0px;
        left: 0px;
        right: 0px;
        height: 100%;
        width: 100%;
        padding: 30px 10px 10px 10px;
    }
}

.displayFlex {
    display: flex;
}

// igv overrides
.igv-ui-popover {
    border: 1px solid $borderColor;
    padding: 5px;
    box-shadow: $boxShadow;

    > div:first-child {
        background: none;
        border: none;
        height: 1px;
        svg {
            position: relative;
            top: 2px;
            right: -4px;
        }
    }
}

.marching-ants {
    @include marching-ants();
}