removed compilant option for prokka

saramonzon · saramonzon · commit 724c5260d19a · 2021-04-12T12:14:56.000+02:00
diff --git a/bin/prokka_annotation.sh b/bin/prokka_annotation.sh
@@ -212,7 +212,7 @@ prokka --force --outdir $output_dir \
 --usegenus \
 --centre BU-ISCIII \
 --locustag $prefix \
---compliant \
+--addgenes \
 --cpus $threads \
 $input_file #|| error ${LINENO} $(basename $0) "Prokka command failed. See $output_dir/logs for more information."
 
