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Additional mutations from full mutation report are being excluded from _tbprofiler_resistance.csv file #10

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taranewman opened this issue Jun 22, 2023 · 0 comments · Fixed by #11
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Additional mutations from full mutation report are being excluded from _tbprofiler_resistance.csv file #10

taranewman opened this issue Jun 22, 2023 · 0 comments · Fixed by #11

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@taranewman
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taranewman commented Jun 22, 2023 •
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The _tbprofiler_full_report.csv can contain multiple mutiple mutations per antibiotic. The _tbprofiler_resistance.csv file created in split_tbprofiler_csv.py only outputs the first mutation from the full report.
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parse multiple resistance mutations BCCDC-PHL/tbprofiler-nf
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@taranewman