09/12/2024 Update.

* Corrected some type hints according to `mypy` package.
* Corrected a typo in help messages.

Author: Augus1999

mol2chemfigPy3/chemfig_mappings.py

@@ -6,7 +6,7 @@
 the TeX syntax defined by the chemfig package.
 """
 import textwrap
-from typing import Union, Optional, List, Tuple, Dict
+from typing import Union, Optional, List, Tuple, Dict, Any
 
 BOND_CODE_WIDTH = 50  # space for bonds - generous upfront, will be trimmed at the end
 TERSE_LINE_WIDTH = 75  # in terse code format, force linebreaks
@@ -158,7 +158,7 @@ def format_angle(
     return prefix + str(angle % 360)
 
 
-def specifier_default(val: any, default: any) -> str:
+def specifier_default(val: Any, default: Any) -> str:
     """
     set bond specifier default values to ""
 
@@ -539,3 +539,7 @@ def format_output(options: Dict, output_list: List[str]) -> str:
         joiner = "\n"
 
     return joiner.join(output_list)
+
+
+if __name__ == "__main__":
+    ...

mol2chemfigPy3/common.py

@@ -2,9 +2,10 @@
 """
 common settings and a bit of infrastructure
 """
+from typing import Any
 from .options import getParser
 
-program_version = "1.5.10"
+program_version = "1.5.11"
 
 # pubchem url for retrieving sdf for numerical IDs
 pubchem_url = (
@@ -78,7 +79,7 @@ class MCFError(Exception):
     this flags an anticipated error due to faulty user input.
     """
 
-    def __init__(self, text: any):
+    def __init__(self, text: Any):
         self.text = str(text)
 
     def __str__(self):
@@ -100,7 +101,7 @@ def __init__(self, lst: list):
 
             self._d[val] += 1
 
-    def most_common(self) -> any:
+    def most_common(self) -> Any:
         """
         return the most common object
 

mol2chemfigPy3/optionparser.py

@@ -53,7 +53,7 @@ def __init__(
 
         self.help_text = help_text
 
-    def _default(self) -> None:
+    def _default(self) -> Any:
         """
         give the default value, i.e., None
 
@@ -361,7 +361,7 @@ def __init__(self) -> None:
         self._options_by_name = {}
         self._options_by_key = {}
 
-    def append(self, option: any) -> None:
+    def append(self, option: Any) -> None:
         """
         add option
 
@@ -400,7 +400,7 @@ def option_values(self) -> Dict:
 
         return option_dict
 
-    def process_form_fields(self, fields: any) -> Tuple[Dict, List]:
+    def process_form_fields(self, fields: Any) -> Tuple[Dict, List]:
         """
         process options received through the web form.
         we don't look at the cargo data here at all.
@@ -500,3 +500,7 @@ def form_tags(self) -> List:
         :return: [tag_1, tag_2,...]
         """
         return [opt.format_tag() for opt in self._options]
+
+
+if __name__ == "__main__":
+    ...

mol2chemfigPy3/options.py

@@ -300,7 +300,7 @@ def getParser() -> OptionParser:
         Specify bonds that should be drawn on top of others they cross over.
         Give the start and the end atoms.
         Example for one bond: --cross-bond=5-6
-        Example for two bonds: --crossbond=4-8,12-13
+        Example for two bonds: --cross-bond=4-8,12-13
         """,
         )
     )