diff --git a/.binder/README.md b/.binder/README.md new file mode 100644 index 0000000000..3ff2958774 --- /dev/null +++ b/.binder/README.md @@ -0,0 +1,5 @@ +# .binder/ + +Configuration files for [binder](https://mybinder.org/) / repo2docker. + +Doc: https://mybinder.readthedocs.io/en/latest/using/config_files.html diff --git a/.binder/apt.txt b/.binder/apt.txt new file mode 100644 index 0000000000..4fce5fecdc --- /dev/null +++ b/.binder/apt.txt @@ -0,0 +1,5 @@ +clang +libatlas-base-dev +libboost-serialization-dev +libhdf5-serial-dev +swig diff --git a/.binder/postBuild b/.binder/postBuild new file mode 100755 index 0000000000..248a9eab4b --- /dev/null +++ b/.binder/postBuild @@ -0,0 +1,6 @@ +#!/bin/bash +set -eou pipefail + +pip install -e python/sdist[petab,pysb] + +scripts/buildBNGL.sh diff --git a/.binder/runtime.txt b/.binder/runtime.txt new file mode 100644 index 0000000000..55090899d0 --- /dev/null +++ b/.binder/runtime.txt @@ -0,0 +1 @@ +python-3.10 diff --git a/.binder/start b/.binder/start new file mode 100755 index 0000000000..fd8bf31a7e --- /dev/null +++ b/.binder/start @@ -0,0 +1,6 @@ +#!/bin/bash +set -eou pipefail + +export BNGPATH="$(pwd)/ThirdParty/BioNetGen-2.7.0" + +exec "$@"