*+Make Leith viscosity runs layout-invariant

  Added the new function hor_visc_vel_stencil to return the velocity stencil of
the velocity fields used by horizontal_viscosity depending on the options that
are in use, and then use this information in the group_pass calls for the
velocities that are passed to horizontal_viscosity.  Also adjusted the size of
the loops used to set up DX_dyBu and DY_dxBu in the hor_visc control structure
depending on the horizontal viscosity options and added a test in hor_visc_init
for a large enough halo size for the options that are in use.  Both of these
answer-changing modifications are necessary for MOM6 to reproduce across PE
count and layout) when Leith viscosity parameterizations are in use.

  The MOM_hor_visc code was also revised slightly in several places to more
closely adhere to MOM6 style with respect to using a 2-point indent and similar
purely cosmetic considerations.

  This commit does change answers when a Leith viscosity is in use, and adds a
new publicly visible function.  Answers are bitwise identical when a Leith
viscosity is not being used.

Author: Hallberg-NOAA

src/core/MOM_dynamics_split_RK2.F90

@@ -49,7 +49,7 @@ module MOM_dynamics_split_RK2
 use MOM_grid,                  only : ocean_grid_type
 use MOM_harmonic_analysis,     only : harmonic_analysis_CS
 use MOM_hor_index,             only : hor_index_type
-use MOM_hor_visc,              only : horizontal_viscosity, hor_visc_CS
+use MOM_hor_visc,              only : horizontal_viscosity, hor_visc_CS, hor_visc_vel_stencil
 use MOM_hor_visc,              only : hor_visc_init, hor_visc_end
 use MOM_interface_heights,     only : thickness_to_dz, find_col_avg_SpV
 use MOM_lateral_mixing_coeffs, only : VarMix_CS
@@ -400,7 +400,7 @@ subroutine step_MOM_dyn_split_RK2(u_inst, v_inst, h, tv, visc, Time_local, dt, f
   logical :: showCallTree, sym
 
   integer :: i, j, k, is, ie, js, je, Isq, Ieq, Jsq, Jeq, nz
-  integer :: cont_stencil, obc_stencil
+  integer :: cont_stencil, obc_stencil, vel_stencil
 
   is  = G%isc  ; ie  = G%iec  ; js  = G%jsc  ; je  = G%jec ; nz = GV%ke
   Isq = G%IscB ; Ieq = G%IecB ; Jsq = G%JscB ; Jeq = G%JecB
@@ -470,19 +470,20 @@ subroutine step_MOM_dyn_split_RK2(u_inst, v_inst, h, tv, visc, Time_local, dt, f
   if (associated(CS%OBC)) then
     if (CS%OBC%oblique_BCs_exist_globally) obc_stencil = 3
   endif
+  vel_stencil = max(2, obc_stencil, hor_visc_vel_stencil(CS%hor_visc))
   call cpu_clock_begin(id_clock_pass)
   call create_group_pass(CS%pass_eta, eta, G%Domain, halo=1)
   call create_group_pass(CS%pass_visc_rem, CS%visc_rem_u, CS%visc_rem_v, G%Domain, &
                          To_All+SCALAR_PAIR, CGRID_NE, halo=max(1,cont_stencil))
   call create_group_pass(CS%pass_uvp, up, vp, G%Domain, halo=max(1,cont_stencil))
   call create_group_pass(CS%pass_hp_uv, hp, G%Domain, halo=2)
-  call create_group_pass(CS%pass_hp_uv, u_av, v_av, G%Domain, halo=max(2,obc_stencil))
-  call create_group_pass(CS%pass_hp_uv, uh(:,:,:), vh(:,:,:), G%Domain, halo=max(2,obc_stencil))
+  call create_group_pass(CS%pass_hp_uv, u_av, v_av, G%Domain, halo=vel_stencil)
+  call create_group_pass(CS%pass_hp_uv, uh(:,:,:), vh(:,:,:), G%Domain, halo=vel_stencil)
 
   call create_group_pass(CS%pass_uv, u_inst, v_inst, G%Domain, halo=max(2,cont_stencil))
   call create_group_pass(CS%pass_h, h, G%Domain, halo=max(2,cont_stencil))
-  call create_group_pass(CS%pass_av_uvh, u_av, v_av, G%Domain, halo=max(2,obc_stencil))
-  call create_group_pass(CS%pass_av_uvh, uh(:,:,:), vh(:,:,:), G%Domain, halo=max(2,obc_stencil))
+  call create_group_pass(CS%pass_av_uvh, u_av, v_av, G%Domain, halo=vel_stencil)
+  call create_group_pass(CS%pass_av_uvh, uh(:,:,:), vh(:,:,:), G%Domain, halo=vel_stencil)
   call cpu_clock_end(id_clock_pass)
   !--- end set up for group halo pass
 

src/parameterizations/lateral/MOM_hor_visc.F90

@@ -31,7 +31,7 @@ module MOM_hor_visc
 
 #include <MOM_memory.h>
 
-public horizontal_viscosity, hor_visc_init, hor_visc_end
+public horizontal_viscosity, hor_visc_init, hor_visc_end, hor_visc_vel_stencil
 
 !> Control structure for horizontal viscosity
 type, public :: hor_visc_CS ; private
@@ -1296,10 +1296,9 @@ subroutine horizontal_viscosity(u, v, h, uh, vh, diffu, diffv, MEKE, VarMix, G,
       if ((CS%Smagorinsky_Ah) .or. (CS%Leith_Ah) .or. (CS%use_Leithy)) then
         if (CS%Smagorinsky_Ah) then
           if (CS%bound_Coriolis) then
-           do j=js_Kh,je_Kh ; do i=is_Kh,ie_Kh
+            do j=js_Kh,je_Kh ; do i=is_Kh,ie_Kh
               AhSm = Shear_mag(i,j) * (CS%Biharm_const_xx(i,j) &
-                  + CS%Biharm_const2_xx(i,j) * Shear_mag(i,j) &
-              )
+                  + CS%Biharm_const2_xx(i,j) * Shear_mag(i,j))
               Ah(i,j) = max(Ah(i,j), AhSm)
             enddo ; enddo
           else
@@ -1565,10 +1564,7 @@ subroutine horizontal_viscosity(u, v, h, uh, vh, diffu, diffv, MEKE, VarMix, G,
 
     ! Pass the velocity gradients and thickness to ZB2020
     if (CS%use_ZB2020) then
-      call ZB2020_copy_gradient_and_thickness( &
-           sh_xx, sh_xy, vort_xy,              &
-           hq,                                 &
-           G, GV, CS%ZB2020, k)
+      call ZB2020_copy_gradient_and_thickness(sh_xx, sh_xy, vort_xy, hq, G, GV, CS%ZB2020, k)
     endif
 
     if (CS%Laplacian) then
@@ -1721,8 +1717,7 @@ subroutine horizontal_viscosity(u, v, h, uh, vh, diffu, diffv, MEKE, VarMix, G,
           if (CS%bound_Coriolis) then
             do J=js-1,Jeq ; do I=is-1,Ieq
               AhSm = Shear_mag(I,J) * (CS%Biharm_const_xy(I,J) &
-                  + CS%Biharm_const2_xy(I,J) * Shear_mag(I,J) &
-              )
+                  + CS%Biharm_const2_xy(I,J) * Shear_mag(I,J))
               Ah(I,J) = max(Ah(I,J), AhSm)
             enddo ; enddo
           else
@@ -1751,8 +1746,7 @@ subroutine horizontal_viscosity(u, v, h, uh, vh, diffu, diffv, MEKE, VarMix, G,
         ! *Add* the MEKE contribution
         do J=js-1,Jeq ; do I=is-1,Ieq
           Ah(I,J) = Ah(I,J) + 0.25 * ( &
-              (MEKE%Au(i,j) + MEKE%Au(i+1,j+1)) + (MEKE%Au(i+1,j) + MEKE%Au(i,j+1)) &
-          )
+              (MEKE%Au(i,j) + MEKE%Au(i+1,j+1)) + (MEKE%Au(i+1,j) + MEKE%Au(i,j+1)) )
         enddo ; enddo
       endif
 
@@ -2228,11 +2222,15 @@ subroutine horizontal_viscosity(u, v, h, uh, vh, diffu, diffv, MEKE, VarMix, G,
 
   if (CS%debug) then
     if (CS%Laplacian) then
+      ! In symmetric memory mode, Kh_h should also be valid with a haloshift of 1.
       call hchksum(Kh_h, "Kh_h", G%HI, haloshift=0, unscale=US%L_to_m**2*US%s_to_T)
-      call Bchksum(Kh_q, "Kh_q", G%HI, haloshift=0, unscale=US%L_to_m**2*US%s_to_T)
+      call Bchksum(Kh_q, "Kh_q", G%HI, haloshift=0, symmetric=.true., unscale=US%L_to_m**2*US%s_to_T)
+    endif
+    if (CS%biharmonic) then
+      ! In symmetric memory mode, Ah_h should also be valid with a haloshift of 1.
+      call hchksum(Ah_h, "Ah_h", G%HI, haloshift=0, unscale=US%L_to_m**4*US%s_to_T)
+      call Bchksum(Ah_q, "Ah_q", G%HI, haloshift=0, symmetric=.true., unscale=US%L_to_m**4*US%s_to_T)
     endif
-    if (CS%biharmonic) call hchksum(Ah_h, "Ah_h", G%HI, haloshift=0, unscale=US%L_to_m**4*US%s_to_T)
-    if (CS%biharmonic) call Bchksum(Ah_q, "Ah_q", G%HI, haloshift=0, unscale=US%L_to_m**4*US%s_to_T)
   endif
 
   if (CS%id_FrictWorkIntz > 0) then
@@ -2793,14 +2791,31 @@ subroutine hor_visc_init(Time, G, GV, US, param_file, diag, CS, ADp)
       ALLOC_(CS%m_leithy_max(isd:ied,jsd:jed)) ; CS%m_leithy_max(:,:) = 0.0
     endif
     if (CS%Re_Ah > 0.0) then
-      ALLOC_(CS%Re_Ah_const_xx(isd:ied,jsd:jed)); CS%Re_Ah_const_xx(:,:) = 0.0
-      ALLOC_(CS%Re_Ah_const_xy(IsdB:IedB,JsdB:JedB)); CS%Re_Ah_const_xy(:,:) = 0.0
+      ALLOC_(CS%Re_Ah_const_xx(isd:ied,jsd:jed)) ; CS%Re_Ah_const_xx(:,:) = 0.0
+      ALLOC_(CS%Re_Ah_const_xy(IsdB:IedB,JsdB:JedB)) ; CS%Re_Ah_const_xy(:,:) = 0.0
     endif
   endif
   do J=js-2,Jeq+1 ; do I=is-2,Ieq+1
     CS%dx2q(I,J) = G%dxBu(I,J)*G%dxBu(I,J) ; CS%dy2q(I,J) = G%dyBu(I,J)*G%dyBu(I,J)
-    CS%DX_dyBu(I,J) = G%dxBu(I,J)*G%IdyBu(I,J) ; CS%DY_dxBu(I,J) = G%dyBu(I,J)*G%IdxBu(I,J)
   enddo ; enddo
+
+  if (((CS%Leith_Kh) .or. (CS%Leith_Ah) .or. (CS%use_Leithy)) .and. &
+      ((G%isc-G%isd < 3) .or. (G%isc-G%isd < 3))) call MOM_error(FATAL, &
+          "The minimum halo size is 3 when a Leith viscosity is being used.")
+  if (CS%use_Leithy) then
+    do J=js-3,Jeq+2 ; do I=is-3,Ieq+2
+      CS%DX_dyBu(I,J) = G%dxBu(I,J)*G%IdyBu(I,J) ; CS%DY_dxBu(I,J) = G%dyBu(I,J)*G%IdxBu(I,J)
+    enddo ; enddo
+  elseif ((CS%Leith_Kh) .or. (CS%Leith_Ah)) then
+    do J=Jsq-2,Jeq+2 ; do I=Isq-2,Ieq+2
+      CS%DX_dyBu(I,J) = G%dxBu(I,J)*G%IdyBu(I,J) ; CS%DY_dxBu(I,J) = G%dyBu(I,J)*G%IdxBu(I,J)
+    enddo ; enddo
+  else
+    do J=js-2,Jeq+1 ; do I=is-2,Ieq+1
+      CS%DX_dyBu(I,J) = G%dxBu(I,J)*G%IdyBu(I,J) ; CS%DY_dxBu(I,J) = G%dyBu(I,J)*G%IdxBu(I,J)
+    enddo ; enddo
+  endif
+
   do j=js-2,Jeq+2 ; do i=is-2,Ieq+2
     CS%dx2h(i,j) = G%dxT(i,j)*G%dxT(i,j) ; CS%dy2h(i,j) = G%dyT(i,j)*G%dyT(i,j)
     CS%DX_dyT(i,j) = G%dxT(i,j)*G%IdyT(i,j) ; CS%DY_dxT(i,j) = G%dyT(i,j)*G%IdxT(i,j)
@@ -2931,12 +2946,12 @@ subroutine hor_visc_init(Time, G, GV, US, param_file, diag, CS, ADp)
         endif
       endif
       if (CS%Leith_Ah) then
-         CS%biharm6_const_xx(i,j) = Leith_bi_const * (grid_sp_h3 * grid_sp_h3)
+        CS%biharm6_const_xx(i,j) = Leith_bi_const * (grid_sp_h3 * grid_sp_h3)
       endif
       if (CS%use_Leithy) then
-         CS%biharm6_const_xx(i,j) = Leith_bi_const * max(G%dxT(i,j),G%dyT(i,j))**6
-         CS%m_const_leithy(i,j) = 0.5 * sqrt(CS%c_K) * max(G%dxT(i,j),G%dyT(i,j))
-         CS%m_leithy_max(i,j) = 4. / max(G%dxT(i,j),G%dyT(i,j))**2
+        CS%biharm6_const_xx(i,j) = Leith_bi_const * max(G%dxT(i,j),G%dyT(i,j))**6
+        CS%m_const_leithy(i,j) = 0.5 * sqrt(CS%c_K) * max(G%dxT(i,j),G%dyT(i,j))
+        CS%m_leithy_max(i,j) = 4. / max(G%dxT(i,j),G%dyT(i,j))**2
       endif
       CS%Ah_bg_xx(i,j) = MAX(Ah, Ah_vel_scale * grid_sp_h2 * sqrt(grid_sp_h2))
       if (CS%Re_Ah > 0.0) CS%Re_Ah_const_xx(i,j) = grid_sp_h3 / CS%Re_Ah
@@ -2961,12 +2976,12 @@ subroutine hor_visc_init(Time, G, GV, US, param_file, diag, CS, ADp)
         endif
       endif
       if ((CS%Leith_Ah) .or. (CS%use_Leithy))then
-         CS%biharm6_const_xy(I,J) = Leith_bi_const * (grid_sp_q3 * grid_sp_q3)
+        CS%biharm6_const_xy(I,J) = Leith_bi_const * (grid_sp_q3 * grid_sp_q3)
       endif
       CS%Ah_bg_xy(I,J) = MAX(Ah, Ah_vel_scale * grid_sp_q2 * sqrt(grid_sp_q2))
       if (CS%Re_Ah > 0.0) CS%Re_Ah_const_xy(i,j) = grid_sp_q3 / CS%Re_Ah
       if (Ah_time_scale > 0.) CS%Ah_bg_xy(i,j) = &
-           MAX(CS%Ah_bg_xy(i,j), (grid_sp_q2 * grid_sp_q2) / Ah_time_scale)
+            MAX(CS%Ah_bg_xy(i,j), (grid_sp_q2 * grid_sp_q2) / Ah_time_scale)
       if (CS%bound_Ah .and. .not.CS%better_bound_Ah) then
         CS%Ah_Max_xy(I,J) = Ah_Limit * (grid_sp_q2 * grid_sp_q2)
         CS%Ah_bg_xy(I,J) = MIN(CS%Ah_bg_xy(I,J), CS%Ah_Max_xy(I,J))
@@ -3250,6 +3265,18 @@ subroutine hor_visc_init(Time, G, GV, US, param_file, diag, CS, ADp)
 
 end subroutine hor_visc_init
 
+!> hor_visc_vel_stencil returns the horizontal viscosity input velocity stencil size
+function hor_visc_vel_stencil(CS) result(stencil)
+  type(hor_visc_CS), intent(in) :: CS !< Control structure for horizontal viscosity
+  integer ::  stencil !< The horizontal viscosity velocity stencil size with the current settings.
+
+  stencil = 2
+
+  if ((CS%Leith_Kh) .or. (CS%Leith_Ah) .or. (CS%use_Leithy)) then
+    stencil = 3
+  endif
+end function hor_visc_vel_stencil
+
 !> Calculates factors in the anisotropic orientation tensor to be align with the grid.
 !! With n1=1 and n2=0, this recovers the approach of Large et al, 2001.
 subroutine align_aniso_tensor_to_grid(CS, n1, n2)